Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_021786.1 Length=9499 Score E Sequences producing significant alignments: (Bits) Value seq4616 178 8e-41 >seq4616 Length=1066 Score = 178 bits (196), Expect = 8e-41 Identities = 356/522 (68%), Gaps = 8/522 (2%) Strand=Plus/Minus Query 8772 TGGTATAACGGAGTCAAGAGTGATTATGAAGTGTCCGATGATGAGATGCAAATAATACTG 8831 |||||| | ||||| | || |||||||| | ||| |||| |||||| | || || Sbjct 933 TGGTATGAGGGAGTGAGGAATGATTATGGCCTTAATGATAATGAAATGCAAGTGATGCTA 874 Query 8832 AATGGTCTAATGGTTTGGTGCATAGAAAATGGCACCTCACCAAATTTATCTGGAGTGTGG 8891 |||||| | ||||||||||| || || ||||| || || ||| | ||||||| || ||| Sbjct 873 AATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCTGGTGTCTGG 814 Query 8892 GTGATGATGGATGGGGATGAACAAATCACATACCCAATAAAACCACTTCTTGATCATGCA 8951 || |||||||||||||| ||| | || ||||| || || | |||| ||||| Sbjct 813 GTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAGCATGCT 754 Query 8952 CAACCAACGTTTAGGCAGATCATGCACCACTTCAGCAACTTGGCAGAAGCGTATATAGAG 9011 || | |||||||| || ||| ||||| || ||| ||||||||| || || | | Sbjct 753 ACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCATACATTGCG 694 Query 9012 AAGCGTAAT--TACACA-AGTCCGTATATGCCAAGATATGGTCGTAATCGCAACCTTACC 9068 ||| | ||| ||| | || ||| ||||| | ||||| || | || | || Sbjct 693 AAGAGAAATGCTACTGAGAG---GTACATGCCGCGGTATGGAATCAAGAGAAATTTGACT 637 Query 9069 GATATGTCCCTCGCGCGTTATGCATTTGATTTTTACGCAATAACATCACGCACCCCAGAG 9128 || || |||||| | || || || || || || | | | || || || || Sbjct 636 GACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAACACCTGAT 577 Query 9129 CGCGCAAAAGAGGCACATATGCAAATGAAGGCCGCAGCCCTTCGTAATACCAGTTCACGA 9188 | || || || || ||||| |||||||| ||||| || || || |||||| | Sbjct 576 AGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCTGCGAAACACCAGTCGCAAA 517 Query 9189 ATGTTTGGACTGGACGGTAAGGTCGGCACACAA-GTAGAGGACACGGAAAGACACACAGC 9247 |||||||| ||||||| | || | | |||| | ||| ||||||| |||||||||| Sbjct 516 ATGTTTGGTATGGACGGCAGTGTTAGTA-ACAAGGAAGAAAACACGGAGAGACACACAGT 458 Query 9248 AGAGGACGTTAATCGAAACATGCACAACCTTCTGGGTGTGCG 9289 || || || ||| || |||||||| || |||||| |||| Sbjct 457 GGAAGATGTCAATAGAGACATGCACTCTCTCCTGGGTATGCG 416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30275548373648