Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_023014.1 Length=9557 Score E Sequences producing significant alignments: (Bits) Value seq4616 196 3e-46 >seq4616 Length=1066 Score = 196 bits (216), Expect = 3e-46 Identities = 384/565 (68%), Gaps = 16/565 (3%) Strand=Plus/Minus Query 8692 CTCAACTTGAATCATTTGTTAGAGTACACACCCCAGCAAGTAGATATATCAAACACACGT 8751 || || || |||||| | | |||||| || || ||| | || || || ||||| ||| Sbjct 1017 CTTAATTTAAATCATCTTCTTCAGTACAATCCGCAACAAATTGACATTTCTAACACTCGT 958 Query 8752 GCCACTCAAGCTCAATTTGACACGTGGTATGAGGCAGTTCGCACGGCATACGACATCAGT 8811 |||||||| | |||||||| | ||||||||||| ||| | | | || | | | | | Sbjct 957 GCCACTCATTCACAATTTGAGAAGTGGTATGAGGGAGTGAGGAATGATTATGGCCTTAAT 898 Query 8812 GAAACGGAAATGCCGACAGTGATG---AATGGATTGATGGTTTGGTGCATTGAAAATGGA 8868 || | ||||||| ||||||| ||||| |||||||||||||| || || ||||| Sbjct 897 GATAATGAAATGCA---AGTGATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGT 841 Query 8869 ACCTCGCCAAATATAAATGGAGTTTGGGTGATGATGGAAGGACAAGAACAGATTGAATTC 8928 || || ||| | ||| ||| || ||||| |||||||| || || || |||| | Sbjct 840 ACATCTCCAGACATATCTGGTGTCTGGGTTATGATGGATGGGGAAACCCAAGTTGATTAT 781 Query 8929 CCGCTCAAACCAATTATTGAAAATGCAAAACCAACATTCAGACAGATCATGGCACACTTC 8988 || |||| || | ||||| |||| | || |||| || || || ||||| ||||| Sbjct 780 CCAATCAAGCCTTTGATTGAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTT 721 Query 8989 TCTGATGTGGCAGAAGCGTATATTGAGATGCGCAACAAGAAAGAACCGTATATGCCACGA 9048 | | | ||||||||| || |||| || | | || | || ||| ||||| || Sbjct 720 AGTAACGCGGCAGAAGCATACATTGCGAAGAGAAATGCTACTGAGAGGTACATGCCGCGG 661 Query 9049 TACGGTTTGGTCAGAAATTTACGTGACATGAGCTTAGCACGCTATGCTTTTGATTTCTAC 9108 || || | |||||||| |||||| ||| | || | || ||||| || ||||| Sbjct 660 TATGGAATCAAGAGAAATTTGACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTAT 601 Query 9109 GAAGTCACGTCTCATACATCAGTTCGCGCTCGTGAAGCACACATCCAGATGAAGGCAGCA 9168 || || | || | ||| | | | | ||||| ||||| ||||| ||||||||||| ||| Sbjct 600 GAGGTGAATTCGAAAACACCTGATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCA 541 Query 9169 GCTTT----AAAATCA-TCGCAAACAAGGATGTTCGGATTAGATGGTGGCATTGGTACAC 9223 || | || | || ||||||| ||||| || | || || | || ||| Sbjct 540 GCGCTGCGAAACACCAGTCGCAAA-----ATGTTTGGTATGGACGGCAGTGTTAGTAACA 486 Query 9224 AGACGGAAAACACAGAAAGACACAC 9248 || |||||||| || |||||||| Sbjct 485 AGGAAGAAAACACGGAGAGACACAC 461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30461111282416