Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_023175.1 Length=10346 Score E Sequences producing significant alignments: (Bits) Value seq4616 585 2e-163 seq4566 168 4e-38 >seq4616 Length=1066 Score = 585 bits (648), Expect = 2e-163 Identities = 523/653 (80%), Gaps = 2/653 (0%) Strand=Plus/Minus Query 9498 CATTTACTGATAAAATGGTTCTACCTA-AGTTCAGAGGAAAAACTGTTTTGAACTTAAAT 9556 ||||||||||||| ||||||||||| | | || || |||| | |||| | || |||||| Sbjct 1064 CATTTACTGATAAGATGGTTCTACCGAGAATTAAGGGGAAGA-CTGTCCTTAATTTAAAT 1006 Query 9557 CATTTGATTCAGTATAATCCGCAGCAGATAGACATCTCAAATACGCGTGCCACCCAAAGC 9616 ||| | ||||||| |||||||| || || ||||| || || || |||||||| || Sbjct 1005 CATCTTCTTCAGTACAATCCGCAACAAATTGACATTTCTAACACTCGTGCCACTCATTCA 946 Query 9617 CAATTTGATAAATGGTATGAGGGTGTGCGTACTGACTATGGGCTTAATGACAATGAAATG 9676 |||||||| || ||||||||||| ||| | | ||| ||||| |||||||| ||||||||| Sbjct 945 CAATTTGAGAAGTGGTATGAGGGAGTGAGGAATGATTATGGCCTTAATGATAATGAAATG 886 Query 9677 CAAGTGATGTTAAATGGCCTAATGGTTTGGTGCATTGAAAATGGCACTTCTCCAGATGTA 9736 ||||||||| ||||||| | ||||||||||| || || ||||| || |||||||| || Sbjct 885 CAAGTGATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATA 826 Query 9737 TCTGGCGTCTGGGTTATGATGGATGGTGATACTCAAGTCGACTATCCTGTCAAACCATTA 9796 ||||| |||||||||||||||||||| || || ||||| || ||||| |||| || || Sbjct 825 TCTGGTGTCTGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTG 766 Query 9797 ATTGAACACGCAACGCCAACATTTCGTCAAATTATGGCACATTTCAGTAATGCGGCAGAG 9856 ||||| || || || || ||||| | ||||||||||| || || ||||| |||||||| Sbjct 765 ATTGAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAA 706 Query 9857 GCATACATTGCGAAAAGGAATGCAACAGAACGATATATGCCTCGTTATGGATTAAAGCGA 9916 |||||||||||||| || ||||| || || | || ||||| || |||||| | ||| || Sbjct 705 GCATACATTGCGAAGAGAAATGCTACTGAGAGGTACATGCCGCGGTATGGAATCAAGAGA 646 Query 9917 AATTTGACTGACATAAGTCTCGCCAGATATGCCTTCGATTTCTATGAAATAAATTCAAAA 9976 |||||||||||||| || ||||| ||||| || ||||| |||||||| | ||||| ||| Sbjct 645 AATTTGACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAA 586 Query 9977 ACTCCTGACCGAGCTCGCGAAGCTCATATGCAGATGAAGGCAGCGGCTCTCCGCAACGCT 10036 || ||||| | |||||||||||||| |||||||||||||| || || || || ||| | Sbjct 585 ACACCTGATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCTGCGAAACACC 526 Query 10037 AATAGGCGCTTATTTGGAATTGACGGCAGCGTCAGTAACAGGGAAGAGAACACGGAGAGA 10096 | | | | ||||| || |||||||| || ||||||| |||||| |||||||||||| Sbjct 525 AGTCGCAAAATGTTTGGTATGGACGGCAGTGTTAGTAACAAGGAAGAAAACACGGAGAGA 466 Query 10097 CACACTGTTGAAGATGTCGATCGCGACATGCACTCTCCCCTTGGAATGCGTAA 10149 ||||| || ||||||||| || | ||||||||||||| ||| || ||||| || Sbjct 465 CACACAGTGGAAGATGTCAATAGAGACATGCACTCTCTCCTGGGTATGCGCAA 413 >seq4566 Length=1050 Score = 168 bits (186), Expect = 4e-38 Identities = 166/212 (78%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 9433 TGGGGAGAGAGACCGAGATGTCAACGCTGGGACGGTGGGGAGTTTTACTGTTCCTCGAAT 9492 ||| |||||||| |||||||||| | |||||| || | ||| |||||||| |||| Sbjct 837 TGGAGAGAGAGATAGAGATGTCAATGTTGGGACCAGTGGAACTTTCACTGTTCCGAGAAT 896 Query 9493 TAAAACATTTACTGATAAAATGGTTCTACCTA-AGTTCAGAGGAAAAACTGTTTTGAACT 9551 |||| ||||||||||||| ||||||||||| | | || || || || ||||| | || | Sbjct 897 TAAATCATTTACTGATAAGATGGTTCTACCGAGAATTAAG-GGGAAGACTGTCCTTAATT 955 Query 9552 TAAATCATTTGATTCAGTATAATCCGCAGCAGATAGACATCTCAAATACGCGTGCCACCC 9611 |||||||| | ||||||| |||||||| || || ||||| || || || |||||||| | Sbjct 956 TAAATCATCTTCTTCAGTACAATCCGCAACAAATTGACATTTCTAACACTCGTGCCACTC 1015 Query 9612 AAAGCCAATTTGATAAATGGTATGAGGGTGTG 9643 | |||||||| || ||||||||||| ||| Sbjct 1016 ATTCACAATTTGAGAAGTGGTATGAGGGAGTG 1047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 32985406713760