Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_023628.1 Length=9687 Score E Sequences producing significant alignments: (Bits) Value seq4616 217 9e-53 >seq4616 Length=1066 Score = 217 bits (240), Expect = 9e-53 Identities = 368/531 (69%), Gaps = 14/531 (3%) Strand=Plus/Minus Query 8859 CAATTCGACACATGGTATGAGGGAGTTATGACAGACTATGATGTTGACGAAGGGAAAATG 8918 ||||| || | |||||||||||||| | || || |||| || | || ||||| Sbjct 945 CAATTTGAGAAGTGGTATGAGGGAGTGAGGAATGATTATGGCCTTAATGATAATGAAATG 886 Query 8919 TCAATCATACTCAATGGACTTATGGTGTGGTGCATTGAAAATGGCACGTCACCAAATATT 8978 | | || || ||||| | ||||| ||||| || || ||||| || || ||| | || Sbjct 885 CAAGTGATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATA 826 Query 8979 AATGGAGTGTGGGTTATGATGGATGGAGAGGAACAAGTTGAATTTCCTTTGAAACCAATC 9038 ||| || ||||||||||||||||| || |||||||| | ||| | || || | Sbjct 825 TCTGGTGTCTGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTG 766 Query 9039 ATCGAACATGCCAAACCAACACTCAGGCAAATAATGGCCCATTTCAGTAACGGCGCTGAA 9098 || || ||||| | || || | |||||||| ||||| || || ||||||| || ||| Sbjct 765 ATTGAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAA 706 Query 9099 GCGTATATTGAGATGAGAAA--CTATCAACAACCGTACATGCCACGGTACGGTCTGCAGC 9156 || || |||| || |||||| ||| | | ||||||||| ||||| || | || Sbjct 705 GCATACATTGCGAAGAGAAATGCTACTGAGA--GGTACATGCCGCGGTATGGAATCAAGA 648 Query 9157 GAAACTTAACCGACATGAGCTTGGCACGCTTTGCTTTTGATTTCTATGAAATGACTTCAA 9216 |||| || || ||||| ||| | || | | ||||| || |||||||| ||| ||| | Sbjct 647 GAAATTTGACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGA 588 Query 9217 AAACACCAATCCGAGCACGAGAGGCACACCTGCAAATGAAAGCGGCAGCCCTTCGAGGCA 9276 ||||||| | || || || || ||| |||| ||||| || ||||| || ||| || Sbjct 587 AAACACCTGATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCTGCGAAACA 528 Query 9277 -----CGCAAAATCATTTATTTGGCTTGGATGGAAACGTTGGTGCAAAAGAAGAGAACAC 9331 ||||||| | ||||| |||| || | ||| || || ||||| ||||| Sbjct 527 CCAGTCGCAAAA-----TGTTTGGTATGGACGGCAGTGTTAGTAACAAGGAAGAAAACAC 473 Query 9332 GGAGAGACACACTACCGACGATGTGAATAGGAATATGCACAGCCTCCTAGG 9382 |||||||||||| || ||||| ||||| | |||||| ||||| || Sbjct 472 GGAGAGACACACAGTGGAAGATGTCAATAGAGACATGCACTCTCTCCTGGG 422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30877028146896