Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_025250.1 Length=9553 Score E Sequences producing significant alignments: (Bits) Value seq4616 192 4e-45 >seq4616 Length=1066 Score = 192 bits (212), Expect = 4e-45 Identities = 342/491 (70%), Gaps = 16/491 (3%) Strand=Plus/Minus Query 8874 ATGCAAATACTGCTCAACGGTCTGATGGTTTGGTGCATTGAGAACGGGACATCTCCAAAT 8933 |||||| | |||| || ||| ||||||||||||| || ||||| || ||||||||| | Sbjct 888 ATGCAAGTGATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGAC 829 Query 8934 ATAGCAGGGGAGTGGGTGATGATGGATGGCACGGAG---CAAGTAACATTCCCGATTAAA 8990 ||| | || | ||||| ||||||||||| ||| ||||| | || || || Sbjct 828 ATATCTGGTGTCTGGGTTATGATGGATGG---GGAAACCCAAGTTGATTATCCAATCAAG 772 Query 8991 CCACTTCTTGAATATGCACAACCAACCTTCAGACAAATAATGGCTCATTTCAGCAATGTA 9050 || | |||| |||| || | || || ||||| |||||||| || || || | Sbjct 771 CCTTTGATTGAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCG 712 Query 9051 GCGGAGGCATACATCGAGATGCGGAACATGAAGGAACCATATATGCCACGTTACGGAAGA 9110 || || |||||||| | || | | || | || || ||||| || || |||| Sbjct 711 GCAGAAGCATACATTGCGAAGAGAAATGCTACTGAGAGGTACATGCCGCGGTATGGAATC 652 Query 9111 ATGAGAAATTTGAACGACATGAGCTTGGCACGCTACGCATTCGATTTTTACGAAATAACA 9170 | ||||||||||| ||||| ||| | || | ||||| ||||| || || || | | Sbjct 651 AAGAGAAATTTGACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAAT 592 Query 9171 TCGAAAACACCATCACGCGCAAGGGAGGCACACATGCAAATGAAGGCTGCCGCACTGCAC 9230 ||||||||||| | || | || || |||||||| ||||||||||| || |||| Sbjct 591 TCGAAAACACCTGATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCTGCGA 532 Query 9231 GGCAGC-GTCAGCAACATGTTTGGATTGGATGGTAATG-TAGCAACAACGAGTGAAAACA 9288 || | ||| |||| |||||||| |||| || | || ||| ||||| || ||||||| Sbjct 531 AACACCAGTC-GCAAAATGTTTGGTATGGACGGCAGTGTTAGTAACAAGGA-AGAAAACA 474 Query 9289 CGGAAAGGCACACAGCGAGCGATGTAAGCAATA---ACATGCATAGCCTCCTTGGCATGC 9345 |||| || ||||||| | ||||| ||||| ||||||| ||||| || |||| Sbjct 473 CGGAGAGACACACAGTGGAAGATGT---CAATAGAGACATGCACTCTCTCCTGGGTATGC 417 Query 9346 GCATGTAAATA 9356 ||| |||||| Sbjct 416 GCAACTAAATA 406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30448313840432