Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06]
17,764 sequences; 369,781,828 total letters
Query= NC_025254.1
Length=9491
Score E
Sequences producing significant alignments: (Bits) Value
seq4616 257 1e-64
>seq4616
Length=1066
Score = 257 bits (284), Expect = 1e-64
Identities = 417/598 (70%), Gaps = 4/598 (1%)
Strand=Plus/Minus
Query 8727 GGGAAAACAGTTCTAAATTTAGAACATTTGATACAGTACAATCCAGAGCAAACTGACTTG 8786
||||| || || || |||||| | ||| | | ||||||||||| | |||| |||| |
Sbjct 1029 GGGAAGACTGTCCTTAATTTAAATCATCTTCTTCAGTACAATCCGCAACAAATTGACATT 970
Query 8787 TCAAATACAAGATCAACCCATAACCAATTTAACAATTGGTATGATGGTGTTAAGAAGGAC 8846
|| || || | | || ||| |||||| | || |||||||| || || | ||| ||
Sbjct 969 TCTAACACTCGTGCCACTCATTCACAATTTGAGAAGTGGTATGAGGGAGTGAGGAATGAT 910
Query 8847 TACGAACTTAATGATGATCAAATGGAAATCATATTGAATGGTCTCATGGTATGGTGCATA 8906
|| | ||||||||| || ||||| || | || | |||||| | ||||| ||||| ||
Sbjct 909 TATGGCCTTAATGATAATGAAATGCAAGTGATGCTAAATGGTTTGATGGTTTGGTGTATC 850
Query 8907 GAGAATGGTTGTTCTCCAAACATAAATGGAATGTGGGTGATGATGGATGGTGAGGAACAG 8966
||||||||| |||||| ||||| ||| | ||||| ||||||||||| || ||
Sbjct 849 GAGAATGGTACATCTCCAGACATATCTGGTGTCTGGGTTATGATGGATGGGGAAACCCAA 790
Query 8967 ATAGAGTACCCGATAAAACCATTAATTGATCACGCCAAACCTACATTTCGCCAAATAATG 9026
| || || || || || || || ||||| || || | || ||||| | ||||| |||
Sbjct 789 GTTGATTATCCAATCAAGCCTTTGATTGAGCATGCTACTCCGTCATTTAGGCAAATTATG 730
Query 9027 GCCCATTTCAGTGACGCCGCTGAAGCGTACATTGAAAAGAGAAATGC--CGAAAAAGCAT 9084
|| || || ||| |||| || ||||| ||||||| ||||||||||| | | | | |
Sbjct 729 GCTCACTTTAGTAACGCGGCAGAAGCATACATTGCGAAGAGAAATGCTACTGAGAGG--T 672
Query 9085 ACATGCCCAGATATGGGCTTCAGCGCAACTTAAACGATCCGAGTCTTGCACGTTATGCAT 9144
||||||| | ||||| | || | || || | || || || || | || || |
Sbjct 671 ACATGCCGCGGTATGGAATCAAGAGAAATTTGACTGACATTAGCCTCGCTAGATACGCTT 612
Query 9145 TCGACTTTTACGAGATGACTGCAAAGACACCAAATAGAGCCAGAGAAGCCCACCTGCAGA 9204
||||||| || ||| ||| | | || ||||| |||| || | ||||| ||| ||||||
Sbjct 611 TCGACTTCTATGAGGTGAATTCGAAAACACCTGATAGGGCTCGCGAAGCTCACATGCAGA 552
Query 9205 TGAAGGCGGCGGCTCTAAGAAATGCTAGTAATAAGTTATTTGGCATAGATGGAAAGGTGA 9264
||||||| || || || |||| | ||| || | ||||| || || || | || |
Sbjct 551 TGAAGGCTGCAGCGCTGCGAAACACCAGTCGCAAAATGTTTGGTATGGACGGCAGTGTTA 492
Query 9265 GTTCACAGGAAGAGGACACGGAAAGGCACACCACTGATGATGTGAATCGGAACATGCA 9322
|| ||||||| ||||||| || ||||| || ||||| ||| | |||||||
Sbjct 491 GTAACAAGGAAGAAAACACGGAGAGACACACAGTGGAAGATGTCAATAGAGACATGCA 434
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 30249953489680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |