Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_025254.1 Length=9491 Score E Sequences producing significant alignments: (Bits) Value seq4616 257 1e-64 >seq4616 Length=1066 Score = 257 bits (284), Expect = 1e-64 Identities = 417/598 (70%), Gaps = 4/598 (1%) Strand=Plus/Minus Query 8727 GGGAAAACAGTTCTAAATTTAGAACATTTGATACAGTACAATCCAGAGCAAACTGACTTG 8786 ||||| || || || |||||| | ||| | | ||||||||||| | |||| |||| | Sbjct 1029 GGGAAGACTGTCCTTAATTTAAATCATCTTCTTCAGTACAATCCGCAACAAATTGACATT 970 Query 8787 TCAAATACAAGATCAACCCATAACCAATTTAACAATTGGTATGATGGTGTTAAGAAGGAC 8846 || || || | | || ||| |||||| | || |||||||| || || | ||| || Sbjct 969 TCTAACACTCGTGCCACTCATTCACAATTTGAGAAGTGGTATGAGGGAGTGAGGAATGAT 910 Query 8847 TACGAACTTAATGATGATCAAATGGAAATCATATTGAATGGTCTCATGGTATGGTGCATA 8906 || | ||||||||| || ||||| || | || | |||||| | ||||| ||||| || Sbjct 909 TATGGCCTTAATGATAATGAAATGCAAGTGATGCTAAATGGTTTGATGGTTTGGTGTATC 850 Query 8907 GAGAATGGTTGTTCTCCAAACATAAATGGAATGTGGGTGATGATGGATGGTGAGGAACAG 8966 ||||||||| |||||| ||||| ||| | ||||| ||||||||||| || || Sbjct 849 GAGAATGGTACATCTCCAGACATATCTGGTGTCTGGGTTATGATGGATGGGGAAACCCAA 790 Query 8967 ATAGAGTACCCGATAAAACCATTAATTGATCACGCCAAACCTACATTTCGCCAAATAATG 9026 | || || || || || || || ||||| || || | || ||||| | ||||| ||| Sbjct 789 GTTGATTATCCAATCAAGCCTTTGATTGAGCATGCTACTCCGTCATTTAGGCAAATTATG 730 Query 9027 GCCCATTTCAGTGACGCCGCTGAAGCGTACATTGAAAAGAGAAATGC--CGAAAAAGCAT 9084 || || || ||| |||| || ||||| ||||||| ||||||||||| | | | | | Sbjct 729 GCTCACTTTAGTAACGCGGCAGAAGCATACATTGCGAAGAGAAATGCTACTGAGAGG--T 672 Query 9085 ACATGCCCAGATATGGGCTTCAGCGCAACTTAAACGATCCGAGTCTTGCACGTTATGCAT 9144 ||||||| | ||||| | || | || || | || || || || | || || | Sbjct 671 ACATGCCGCGGTATGGAATCAAGAGAAATTTGACTGACATTAGCCTCGCTAGATACGCTT 612 Query 9145 TCGACTTTTACGAGATGACTGCAAAGACACCAAATAGAGCCAGAGAAGCCCACCTGCAGA 9204 ||||||| || ||| ||| | | || ||||| |||| || | ||||| ||| |||||| Sbjct 611 TCGACTTCTATGAGGTGAATTCGAAAACACCTGATAGGGCTCGCGAAGCTCACATGCAGA 552 Query 9205 TGAAGGCGGCGGCTCTAAGAAATGCTAGTAATAAGTTATTTGGCATAGATGGAAAGGTGA 9264 ||||||| || || || |||| | ||| || | ||||| || || || | || | Sbjct 551 TGAAGGCTGCAGCGCTGCGAAACACCAGTCGCAAAATGTTTGGTATGGACGGCAGTGTTA 492 Query 9265 GTTCACAGGAAGAGGACACGGAAAGGCACACCACTGATGATGTGAATCGGAACATGCA 9322 || ||||||| ||||||| || ||||| || ||||| ||| | ||||||| Sbjct 491 GTAACAAGGAAGAAAACACGGAGAGACACACAGTGGAAGATGTCAATAGAGACATGCA 434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30249953489680