Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_025821.1 Length=9741 Score E Sequences producing significant alignments: (Bits) Value seq4616 237 1e-58 >seq4616 Length=1066 Score = 237 bits (262), Expect = 1e-58 Identities = 393/558 (70%), Gaps = 12/558 (2%) Strand=Plus/Minus Query 8888 CAGTACAAACCACCACAGCTCGAACTTTCGAACACACGTGCCACTCACAGCCAATTCAAA 8947 |||||||| || | ||| | || |||| ||||| ||||||||||| ||||| | Sbjct 996 CAGTACAATCCGCAACAAATTGACATTTCTAACACTCGTGCCACTCATTCACAATTTGAG 937 Query 8948 TCATGGTATGAAGAAGTCAAAGGAGCG--TACGGAATGGATGATGCCAACATGCAAATTA 9005 |||||||| | ||| | ||| | || || | ||||| | |||||| | | Sbjct 936 AAGTGGTATGAGGGAGTGA--GGAATGATTATGGCCTTAATGATAATGAAATGCAAGTGA 879 Query 9006 TATTGAATGGTCTGATGGTGTGGTGTATTGAGAATGGAACATCACCAAACATAAATGGAA 9065 | | |||||| ||||||| |||||||| |||||||| ||||| ||| ||||| ||| Sbjct 878 TGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCTGGTG 819 Query 9066 ACTGGGTTATGATGGATGGAGAGGCACAAGTTGAATATCCTTTAAAACCAATCATAGAAA 9125 |||||||||||||||||| || | |||||||| ||||| | || || | || || Sbjct 818 TCTGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAGC 759 Query 9126 ATGCCAAACCCACGTTTCGCCAAATAATGGCCCATTTCAGTGACGTAGCTGAAGCGTACA 9185 |||| | || | ||| | ||||| ||||| || || ||| ||| || ||||| |||| Sbjct 758 ATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCATACA 699 Query 9186 TTGAAATGCGTAATACAACAGAGAAGTACATGCCAAGGTATGGACGTCAGCGCAATCTCA 9245 ||| | | | ||| | || |||| ||||||||| |||||||| || | ||| | | Sbjct 698 TTGCGAAGAGAAATGCTACTGAGAGGTACATGCCGCGGTATGGAATCAAGAGAAATTTGA 639 Query 9246 ACGAC--TACCAACTTGCACGTTATGCATTTGACTTTTATGAGATAACGTCGAGGACACC 9303 ||| || | || || | || || || ||||| |||||| | | |||| ||||| Sbjct 638 CTGACATTAGC--CTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAACACC 581 Query 9304 GAATCGTGCACGAGAAGCTCACTTTCAGATGAAAGCAGCAGCTCTACATAACACGAAGAC 9363 || | || || ||||||||| | |||||||| || ||||| || | ||||| || | Sbjct 580 TGATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCTGCGAAACAC-CAGTC 522 Query 9364 AC-GAACATTCGGTTTGGATGGGAAAGTT-GGAACACAGGAAGAGGACACGGAGAGGCAC 9421 | || || ||| |||| || | ||| | |||| ||||||| |||||||||| ||| Sbjct 521 GCAAAATGTTTGGTATGGACGGCAGTGTTAGTAACA-AGGAAGAAAACACGGAGAGACAC 463 Query 9422 ACAGCAGGGGATGTCAAT 9439 |||| | ||||||||| Sbjct 462 ACAGTGGAAGATGTCAAT 445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 31049793613680