Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_026615.1 Length=9720 Score E Sequences producing significant alignments: (Bits) Value seq4616 167 1e-37 >seq4616 Length=1066 Score = 167 bits (184), Expect = 1e-37 Identities = 395/591 (67%), Gaps = 12/591 (2%) Strand=Plus/Minus Query 8815 CTTCAATACAAACCAGAACAGTATGATCTCTCAAATACAAGAGCTACACATCAACAGTTT 8874 ||||| ||||| || |||| ||| | || || || | || || ||| ||| ||| Sbjct 999 CTTCAGTACAATCCGCAACAAATTGACATTTCTAACACTCGTGCCACTCATTCACAATTT 940 Query 8875 TCACACTGGTTTGATGCTGTGAAGAGTGCTTATGAGGTCACTGATGATCAGATGCAAGTG 8934 | |||| ||| | |||| || || ||||| | | |||| || | ||||||||| Sbjct 939 GAGAAGTGGTATGAGGGAGTGAGGAATGATTATGGCCTTAATGATAATGAAATGCAAGTG 880 Query 8935 TTACTCAATGGACTGATGGTTTGGTGCATTGAGAATGGGACA--TCCGGAAATCTCCAAG 8992 | || ||||| ||||||||||||| || |||||||| ||| ||| || || || | Sbjct 879 ATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATC--TG 822 Query 8993 GTGTTTGGACAATGATGGATGGTGCTGAGCAAGTGGAATATTCTTTAAAACCCATCATAG 9052 |||| ||| ||||||||||| | ||||| || ||| | | || || | || | Sbjct 821 GTGTCTGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTG 762 Query 9053 AGAATGCTCAACCTACTTTTCGCCAGATAATGGCACATTTTAGCGATGTCGCTGAAGCTT 9112 || ||||| || | ||| | || || ||||| || ||||| | | || ||||| | Sbjct 761 AGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCAT 702 Query 9113 ACATTGAGATGAGGAATAGGGATCGTG-CATACATGCCACGGTATGGATTGCAACGAAAC 9171 |||||| || ||| ||| | | | | |||||||| ||||||||| | | |||| Sbjct 701 ACATTGCGAAGAGAAAT-GCTACTGAGAGGTACATGCCGCGGTATGGAATCAAGAGAAAT 643 Query 9172 TTAACTGATTTAAGCTTGGCACGCTATGCATTTGACTTTTACGAGTTAACATCACGTACA 9231 || ||||| | ||| | || | || || || ||||| || ||| | | || ||| Sbjct 642 TTGACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAACA 583 Query 9232 CCTGTACGCGCTCGTGAAGCTCATATGCAAATGAAGGCAGCTGCTGTACGCAACGATACA 9291 |||| | ||||| |||||||| ||||| |||||||| || || | || ||| || Sbjct 582 CCTGATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCTGCGAAAC---ACC 526 Query 9292 AAT---AGATTATTTGGATTGGATGGCAATGTTGGTACAACAGCAGAGGATACTGAACGT 9348 | | | | | ||||| |||| |||| |||| ||| | | ||| | || || | Sbjct 525 AGTCGCAAAATGTTTGGTATGGACGGCAGTGTTAGTAACAAGGAAGAAAACACGGAGAGA 466 Query 9349 CACACAGCCCAGGACGTTAACCGTGGCATGCACAACCTTTTGGGAGTGCGC 9399 ||||||| | || || || | | ||||||| || |||| ||||| Sbjct 465 CACACAGTGGAAGATGTCAATAGAGACATGCACTCTCTCCTGGGTATGCGC 415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30982607043264