Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_027210.1 Length=9575 Score E Sequences producing significant alignments: (Bits) Value seq4616 248 5e-62 >seq4616 Length=1066 Score = 248 bits (274), Expect = 5e-62 Identities = 386/549 (70%), Gaps = 2/549 (0%) Strand=Plus/Minus Query 8673 CAAATTGACATATCCAACACTCGTGCAACCAAGGCACAATTTGAAAACTGGTACGAGAGA 8732 ||||||||||| || ||||||||||| || | |||||||||| || ||||| ||| || Sbjct 981 CAAATTGACATTTCTAACACTCGTGCCACTCATTCACAATTTGAGAAGTGGTATGAGGGA 922 Query 8733 GTTAAGTACGAATACGACGTTGATGATCAGCAGATGTCTATATTAATGAATGGCTTAATG 8792 || | | | || || | | || ||||| | | ||| | | | ||||| || ||| Sbjct 921 GTGAGGAATGATTATGGCCTTAATGATAATGAAATGCAAGTGATGCTAAATGGTTTGATG 862 Query 8793 GTTTGGTGTATTGAAAATGGCACATCTCCGAACATAAATGGAATGTGGACAATGATGAGT 8852 ||||||||||| || ||||| |||||||| ||||| ||| | ||| |||||| | Sbjct 861 GTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCTGGTGTCTGGGTTATGATGGAT 802 Query 8853 GACGATACACAGGAAGAATATCCACTCAAACCAATCATTGAAAATGCCAAACCCACATTC 8912 | || || || | || |||||| |||| || | ||||| |||| | || |||| Sbjct 801 GGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAGCATGCTACTCCGTCATTT 742 Query 8913 CGGCAAATAATGGCACATTTCTCGGGCGCAGCTGAAGCGTACATTGAAATGAGAAACTCA 8972 ||||||| ||||| || || ||| || ||||| ||||||| | |||||| | Sbjct 741 AGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCATACATTGCGAAGAGAAATGCT 682 Query 8973 AAAGAACCGTATATGCCCAGATACGGCCTTCAGCGAAATCTAACTGACATGTCTCTTGCT 9032 | || ||| ||||| | || || | || ||||| | |||||||| || ||| Sbjct 681 ACTGAGAGGTACATGCCGCGGTATGGAATCAAGAGAAATTTGACTGACATTAGCCTCGCT 622 Query 9033 AGGTATGCATTTGACTTCTATGAAGTAACATCCAAAACTCCTAACAGGGCAAGGGAGGCT 9092 || || || || ||||||||||| || | || ||||| ||| | ||||| | || ||| Sbjct 621 AGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAACACCTGATAGGGCTCGCGAAGCT 562 Query 9093 CACATGCAAATGAAAGCAGCAGCGCTCAGAAACACGAG-CTCAAGACTCTTTGGTTTGGA 9151 |||||||| ||||| || |||||||| ||||||| || | ||| | | |||||| |||| Sbjct 561 CACATGCAGATGAAGGCTGCAGCGCTGCGAAACACCAGTCGCAA-AATGTTTGGTATGGA 503 Query 9152 TGGAAATGTCAGTGCTGAGAAAGAAGATACAGAGAGGCACACCACTGATGATGTTAACCG 9211 || | ||| ||| || ||||| | || ||||| ||||| || ||||| || | Sbjct 502 CGGCAGTGTTAGTAACAAGGAAGAAAACACGGAGAGACACACAGTGGAAGATGTCAATAG 443 Query 9212 CAACATGCA 9220 ||||||| Sbjct 442 AGACATGCA 434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30518699771344