Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_027706.1 Length=9829 Score E Sequences producing significant alignments: (Bits) Value seq4616 190 1e-44 >seq4616 Length=1066 Score = 190 bits (210), Expect = 1e-44 Identities = 413/604 (68%), Gaps = 32/604 (5%) Strand=Plus/Minus Query 9015 AAGGGCAAAACAATTCTGAATCTTGATCACTTGCTACAGTATAATCCGGATCAAACGGAT 9074 ||||| || || | || ||| | |||| | || ||||| |||||| | |||| || Sbjct 1032 AAGGGGAAGACTGTCCTTAATTTAAATCATCTTCTTCAGTACAATCCGCAACAAATTGAC 973 Query 9075 TTGTCGAATACAAGAGCCAC-CA---AGAATCAGCTAGCAGCATGGTACGAGGGAGTTAA 9130 | || || || | ||||| || | ||| | || || ||||| |||||||| | Sbjct 972 ATTTCTAACACTCGTGCCACTCATTCACAATTTG--AGAAG--TGGTATGAGGGAGTGAG 917 Query 9131 GAGAGAATATGATGTAGATGATAGTGCCATGAACATCATACTAAATGGTCTAGTGGTTTG 9190 || || |||| | |||||| || ||| | | || ||||||||| | ||||||| Sbjct 916 GAATGATTATGGCCTTAATGATAATGAAATGCAAGTGATGCTAAATGGTTTGATGGTTTG 857 Query 9191 GTGTATAGAAAATGGTAC--CTCAAGTGAACTCAGAGGAGTCTGGACCATGATGGATGGT 9248 |||||| || |||||||| ||| || | || | | |||||| ||||||||||| Sbjct 856 GTGTATCGAGAATGGTACATCTCCAGACATATCTG--GTGTCTGGGTTATGATGGATGGG 799 Query 9249 GAGGAACAAATCGAATATCCAATAAAACCACTGATGGATCACGCCCAACCATCATTTAGA 9308 || ||| | || |||||||| || || |||| || || || || |||||||| Sbjct 798 GAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAGCATGCTACTCCGTCATTTAGG 739 Query 9309 CAAATAATGGCACATTTTAGTGACATAGCGGAGGCGTATATAG-AAAAACAAA--ATTCT 9365 ||||| ||||| || |||||| || || || || || || | || | ||| | || Sbjct 738 CAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCATACATTGCGAAGAGAAATGCTACT 679 Query 9366 GAAAGGGCATGGATGCCACGCTATGGTTTATTAAGAAACATT--ACCGATTTTAGTCTTG 9423 || ||| | ||||| || ||||| || |||| | ||| || || |||| || | Sbjct 678 GAGAGG---TACATGCCGCGGTATGG--AATCAAGAGAAATTTGACTGACATTAGCCTCG 624 Query 9424 CGAGATATTGTTTTGACTTCTATCAGAAGACGTCAAAGACACCTGTCCGAGCCCGTGAAG 9483 | ||||| ||| ||||||||| || || || || ||||||| | || || |||| Sbjct 623 CTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAACACCTGATAGGGCTCGCGAAG 564 Query 9484 CAGTTACA--CAAATGAAAGCGGCAGCGTTGCGAAATGCCAGTACACGC---TTGTTCGG 9538 | | ||| || ||||| || |||||| ||||||| ||||| ||| |||| || Sbjct 563 C--TCACATGCAGATGAAGGCTGCAGCGCTGCGAAACACCAGT---CGCAAAATGTTTGG 509 Query 9539 ATTGGACGGTAATGTAGGGACTAAAGAAGAGAACACAGAGAGGCACACAGCAGAAGATGT 9598 ||||||| | ||| | | || ||||| ||||| ||||| ||||||| |||||||| Sbjct 508 TATGGACGGCAGTGTTAGTAACAAGGAAGAAAACACGGAGAGACACACAGTGGAAGATGT 449 Query 9599 TAAT 9602 ||| Sbjct 448 CAAT 445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 31331337337328