Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_029051.1 Length=9590 Score E Sequences producing significant alignments: (Bits) Value seq4616 233 1e-57 >seq4616 Length=1066 Score = 233 bits (258), Expect = 1e-57 Identities = 364/516 (71%), Gaps = 6/516 (1%) Strand=Plus/Minus Query 8822 CAGTTTGAGACTTGGTATGACGGTGTGA--AATCAGATTATGATGTGTCAGATGAAGGAA 8879 || ||||||| |||||||| || |||| ||| ||||||| | ||| | | || Sbjct 945 CAATTTGAGAAGTGGTATGAGGGAGTGAGGAAT--GATTATGGCCTTAATGATAATGAAA 888 Query 8880 TGCAGATAATCCTTAACGGACTACTTGTCTGGTGCATTGAAAACGGGACCTCACCAAATA 8939 |||| | || || || || | | || ||||| || || || || || || ||| | | Sbjct 887 TGCAAGTGATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACA 828 Query 8940 TTAATGGCGTGTGGGTCATGATGGATGGCGATGAACAAGTGGAGTATCCAATTAAGCCAT 8999 | ||| || ||||| ||||||||||| || ||||| || |||||||| ||||| | Sbjct 827 TATCTGGTGTCTGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTT 768 Query 9000 TAATTGAACATGCGAAACCCACGTTTAGACAAATCATGGCCCACTTCAGCAATGTTGCTG 9059 | ||||| ||||| | || | ||||| ||||| ||||| ||||| || || | || | Sbjct 767 TGATTGAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAG 708 Query 9060 AAGCTTACATCGAGAAAAGGAATATGACGGAGCCGTATATGCCAAGGTACGGGCTCCAAC 9119 |||| ||||| | ||| || ||| || ||| ||| ||||| |||| || || | Sbjct 707 AAGCATACATTGCGAAGAGAAATGCTACTGAGAGGTACATGCCGCGGTATGGAATCAAGA 648 Query 9120 GCAATCTCACCGATATGAGTCTGGCCCGGTATGCTTTTGATTTCTACGAGATGACATCCA 9179 | ||| | || || || || || || | || ||||| || ||||| ||| ||| || | Sbjct 647 GAAATTTGACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGA 588 Query 9180 AAACACCAGTTAGAGCTCGTGAAGCCCACATACAAATGAAAGCTGCTGCATTGAGGAATG 9239 ||||||| | ||| ||||| ||||| ||||| || ||||| ||||| || || | || Sbjct 587 AAACACCTGATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCTGCGAAACA 528 Query 9240 CTAG-CACACGATTGTTTGGGCTCGATGGGAATGTTGGGACAAAAGAGGAGGACACGGAG 9298 | || | || | ||||||| | || || | |||| | | || || || |||||||| Sbjct 527 CCAGTCGCA-AAATGTTTGGTATGGACGGCAGTGTTAGTAACAAGGAAGAAAACACGGAG 469 Query 9299 AGACATACAGCGGATGACGTAAATAGAAACATGCAC 9334 ||||| |||| ||| || || |||||| |||||||| Sbjct 468 AGACACACAGTGGAAGATGTCAATAGAGACATGCAC 433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30566690178784