Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_029076.1 Length=10423 Score E Sequences producing significant alignments: (Bits) Value seq4616 114 9e-22 >seq4616 Length=1066 Score = 114 bits (126), Expect = 9e-22 Identities = 311/466 (67%), Gaps = 14/466 (3%) Strand=Plus/Minus Query 9592 GAAATGAAAATTATCTTGAACGGGCTTATGGTGTGGTGTATTGAGAATGGAACGTCCCCT 9651 |||||| || | || | || || | ||||| |||||||| |||||||| || || || Sbjct 891 GAAATGCAAGTGATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCA 832 Query 9652 GATCTTAGTGGGAATTGGGTCATGATGGATGGTGATGAACAAGTGGAATTTCCTTTGATT 9711 || | ||| ||||| ||||||||||| || ||||| || | ||| | | Sbjct 831 GACATATCTGGTGTCTGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAG 772 Query 9712 CCAGTGCTTAAATATGCACAGCCAACATTTAGACAAATTATGGCACATTTCAGTGACGCA 9771 || || || | |||| || ||||||| ||||||||||| || || ||| |||| Sbjct 771 CCTTTGATTGAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCG 712 Query 9772 GCCGAAGCGTACATTGTAATGAGAAATGCAAAGGAACCATACATGCCCAGGTATGGTATT 9831 || ||||| ||||||| | ||||||||| | || |||||||| ||||||| || Sbjct 711 GCAGAAGCATACATTGCGAAGAGAAATGCTACTGAGAGGTACATGCCGCGGTATGGAATC 652 Query 9832 CGGCGAAACTTAACCGATAGGAACTTGGCGAGGACGGCATTCGATTTTCATATAAGTAAA 9891 | |||| || || || | | | | || || || ||||| || || | || || Sbjct 651 AAGAGAAATTTGACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTAT-GAGGTGAA 593 Query 9892 T---CAGACACCTCGACACGTGCCAGAGAGGCTTCGATCCAAATGAAGGCAGCTGCAGTG 9948 | | |||||| || | | || | || ||| || || |||||| ||||||| | Sbjct 592 TTCGAAAACACCT-GATA-GGGCTCGCGAAGCTCACATGCAGATGAAG---GCTGCAGCG 538 Query 9949 AAGGGCAA-ACCA--CGCAGACTGTTTGGACTAGACGCGAACGTCGGAGCGAATGAAGAG 10005 | | || |||| |||| | ||||||| | |||| | || | || ||||| Sbjct 537 CTGCGAAACACCAGTCGCAAAATGTTTGGTATGGACGGCAGTGTTAGTAACAAGGAAGAA 478 Query 10006 AACACAGAAAGGCACACATCTGATGATGTGAAT-GAAACGATGCAC 10050 ||||| || || |||||| || ||||| ||| || || |||||| Sbjct 477 AACACGGAGAGACACACAGTGGAAGATGTCAATAGAGAC-ATGCAC 433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 33231757471952