Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_030118.1 Length=9896 Score E Sequences producing significant alignments: (Bits) Value seq4616 147 1e-31 >seq4616 Length=1066 Score = 147 bits (162), Expect = 1e-31 Identities = 365/546 (67%), Gaps = 20/546 (4%) Strand=Plus/Minus Query 9048 CAATTGGACATATCGAACACTAGAGCTACACAGAGTCAATTCGATACATGGTATGAATCT 9107 ||| | ||||| || |||||| | || || || ||||| || | |||||||| Sbjct 981 CAAATTGACATTTCTAACACTCGTGCCACTCATTCACAATTTGAGAAGTGGTATGAGGGA 922 Query 9108 GTGAAAAATGCTTATGATGTCCAGGATGGGGAGATGGGGACCATATTAAATGGTCTTATG 9167 |||| |||| ||||| | | ||| || ||| || |||||||| | ||| Sbjct 921 GTGAGGAATGATTATGGCCTTAATGATAATGAAATGCAAGTGATGCTAAATGGTTTGATG 862 Query 9168 GTTTGGTGTATTGAGAATGGAACATCTCCAAACTTGAATGGAGTGTGGACAATGATTGAC 9227 ||||||||||| |||||||| ||||||||| || | ||| || ||| ||||| || Sbjct 861 GTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCTGGTGTCTGGGTTATGATGGAT 802 Query 9228 GGTGAGGAACAAGTTGAATTTCCATTGAAACCAGTCATTGAAAATGCAAAGCCTACTTTT 9287 || || |||||||| | |||| | || || | ||||| |||| | || | ||| Sbjct 801 GGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAGCATGCTACTCCGTCATTT 742 Query 9288 AGGCAAATAATGGCACACTTTTCAGATGTTGCAGAGGCGTATATTGAAATGCGCAACAAA 9347 |||||||| ||||| |||||| | | ||||| || || |||| | | | || Sbjct 741 AGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCATACATTGCGAAGAGAAATGCT 682 Query 9348 AAGGAACCATATATGCCACGGTATGGTTTGACAAGGAATCTGCGAGATATGAGCTTGGCT 9407 | || || ||||| |||||||| | | || ||| || || || ||| | ||| Sbjct 681 ACTGAGAGGTACATGCCGCGGTATGGAATCAAGAGAAATTTGACTGACATTAGCCTCGCT 622 Query 9408 CGTTACGCCTTTGACTTCTTCGAAGTTACATCTCGCACATCCACC----CGCGCCAGGGA 9463 | ||||| || ||||||| || || | || ||| | | |||| | || | || Sbjct 621 AGATACGCTTTCGACTTCTATGAGGTGA-AT-TCGAAAA--CACCTGATAGGGCTCGCGA 566 Query 9464 AGCTCACATTCAAATGAAGGCGGCTGCGGT-CAAAACA----TCGCAAACCAGAATGTTT 9518 ||||||||| || |||||||| || ||| | | ||||| |||||| ||||||| Sbjct 565 AGCTCACATGCAGATGAAGGCTGCAGCGCTGCGAAACACCAGTCGCAA-----AATGTTT 511 Query 9519 GGGCTGGATGGTGGCATCAGTACACAA-GAGGAAAACACAGAACGCCATACCACAGAAGA 9577 || |||| || | | |||| |||| || |||||||| || | || || ||||| Sbjct 510 GGTATGGACGGCAGTGTTAGTA-ACAAGGAAGAAAACACGGAGAGACACACAGTGGAAGA 452 Query 9578 TGTTAA 9583 ||| || Sbjct 451 TGTCAA 446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 31545694490560