Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_030236.1 Length=9622 Score E Sequences producing significant alignments: (Bits) Value seq4616 118 7e-23 >seq4616 Length=1066 Score = 118 bits (130), Expect = 7e-23 Identities = 313/471 (66%), Gaps = 14/471 (3%) Strand=Plus/Minus Query 8774 CTTGAGTATAAACCCAACCAAGTTGATCTTTTTAATACACGTGCTACTCATAAACAATTT 8833 ||| |||| || || | ||| |||| ||| ||| || ||||| |||||| ||||||| Sbjct 999 CTTCAGTACAATCCGCAACAAATTGACATTTCTAACACTCGTGCCACTCATTCACAATTT 940 Query 8834 GAATCATGGTATGAGGCTGTTAGATCAGAATATGAATTGAACGACGATCAGATG---GGG 8890 || |||||||||| || || || |||| | || || || | ||| | | Sbjct 939 GAGAAGTGGTATGAGGGAGTGAGGAATGATTATGGCCTTAATGATAATGAAATGCAAGTG 880 Query 8891 ATCGTTATGAATGGTTTCATGGTGTGGTGCATTGATAATGGAACTTCTCCGGATGTTACT 8950 || | || |||||||| ||||| ||||| || || ||||| || ||||| || | || Sbjct 879 AT-GCTA--AATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCT 823 Query 8951 GGGACGTGGGTGATGATGGATGGCAACGAACAAGTCGAATATCCACTGAAGCCAATAGTT 9010 || ||||| ||||||||||| | ||||| || |||||| | ||||| | || Sbjct 822 GGTGTCTGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATT 763 Query 9011 GAAAACGCTAAACCAACACTTCGACAAATCATGCACCATTTCTCAGATGCAGCTGAGGCA 9070 || | |||| || || || | ||||| ||| || || | || || || ||| Sbjct 762 GAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCA 703 Query 9071 TATATTGAAATGAGGAA--CT-CTGA-AGGACTATATATGCCTAGGTATGGTCTTTTGAG 9126 || |||| | ||| || || |||| ||| || ||||| ||||||| | ||| Sbjct 702 TACATTGCGAAGAGAAATGCTACTGAGAGG----TACATGCCGCGGTATGGAATCAAGAG 647 Query 9127 GAACTTGAGGGATAGAAATCTTGCTCGATATGCATTTGATTTTTACGAAGTTACATCCAA 9186 || |||| || | | || ||| |||| || || || || || || || | || || Sbjct 646 AAATTTGACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAA 587 Query 9187 AACATCGGATCGAGCAAGAGAAGCAATTGCGCAGATGAAAGCAGCAGCCCT 9237 |||| | ||| | || | ||||| ||||||||| || ||||| || Sbjct 586 AACACCTGATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCT 536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30669069714656