Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_030293.1 Length=9310 Score E Sequences producing significant alignments: (Bits) Value seq4616 149 4e-32 >seq4616 Length=1066 Score = 149 bits (164), Expect = 4e-32 Identities = 348/519 (67%), Gaps = 12/519 (2%) Strand=Plus/Minus Query 8601 ACAATTTGATGAATGGTGTGATGGAATCATGAACGATTACGACATCAAGCCAGAAGAACT 8660 ||||||||| | |||| ||| ||| | | ||| ||||| | | | || | ||| | Sbjct 946 ACAATTTGAGAAGTGGTATGAGGGAGTGAGGAATGATTATGGCCTTAATGATAATGAAAT 887 Query 8661 -CAAGCTAGTCTTGAATGGTCTAATGGTTTGGTGTATTGAAAATGGAACATCACCGAATA 8719 |||| | || |||||| | |||||||||||||| || ||||| ||||| || | | Sbjct 886 GCAAGTGATGCTA-AATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACA 828 Query 8720 TAAATGGAATGTGGACAATGATGAAAGGCGACGAGCAATTGGAATATCCAATAAGGCCTT 8779 || ||| | ||| |||||| | || || ||| | || |||||||| | ||||| Sbjct 827 TATCTGGTGTCTGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTT 768 Query 8780 TAATCGATCACGCCAAGCCCACATTTCGCCAGATAATGGCCCATTTCAGTGACGCCGCTG 8839 | || || || || | || ||||| | || || ||||| || || ||| |||| || | Sbjct 767 TGATTGAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAG 708 Query 8840 AAGCGTACATAGTAATGGTTAA---TACAAAGCGTCCGTACATGCCACGATACGGACTTC 8896 |||| ||||| | | | || ||| || | ||||||||| || || ||| | Sbjct 707 AAGCATACATTGCGAAGAGAAATGCTACTGAGAG---GTACATGCCGCGGTATGGAATCA 651 Query 8897 AGCGCGGGCTAAACGACCGCAATCTCGCAAGATACGCGTTTGACTTCTATGAAGTCAACT 8956 || | | | ||| | ||||| |||||||| || ||||||||||| || || | Sbjct 650 AGAGAAATTTGACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATT 591 Query 8957 CACGAACACCGAACAGAGCAAGAGAAGCCCACCATCAAATGAAGGCTGCCGCACTGCGTG 9016 | |||||| | || || | ||||| ||| || ||||||||||| || ||||| Sbjct 590 CGAAAACACCTGATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCTGCGAA 531 Query 9017 GCAGC--TCCAATAGGATGTTTGGTCTTGACGGGAAGGCGAACACAGAGGGTGAAAACAC 9074 || | || | | ||||||||| | ||||| | | | | ||| |||||||| Sbjct 530 ACACCAGTCGCAAA--ATGTTTGGTATGGACGGCAGTGTTAGTAACAAGGAAGAAAACAC 473 Query 9075 GGAAAGACACACCACCGATGATGTTAAGCAGGACATGCA 9113 ||| |||||||| || ||||| || |||||||| Sbjct 472 GGAGAGACACACAGTGGAAGATGTCAATAGAGACATGCA 434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 29670869239904