Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06]
17,764 sequences; 369,781,828 total letters
Query= NC_030391.1
Length=9369
Score E
Sequences producing significant alignments: (Bits) Value
seq4616 217 9e-53
>seq4616
Length=1066
Score = 217 bits (240), Expect = 9e-53
Identities = 397/576 (69%), Gaps = 8/576 (1%)
Strand=Plus/Minus
Query 8563 CATCTCATTGACTACACACCAGACCAAGTGGATATTTCCAACACCAGAGCAACACAGCAA 8622
||||| || | |||| || | ||| | || ||||| ||||| | || || || |
Sbjct 1005 CATCTTCTTCAGTACAATCCGCAACAAATTGACATTTCTAACACTCGTGCCACTCATTCA 946
Query 8623 CAGTTCAACACCTGGTATGAGGGGGTTCGTGACGAATACGAACTCGATGATAGCAAAATG 8682
|| || | | ||||||||||| || | | || || | || |||||| |||||
Sbjct 945 CAATTTGAGAAGTGGTATGAGGGAGTGAGGAATGATTATGGCCTTAATGATAATGAAATG 886
Query 8683 ACAGTAGTCCTGAATGGACTAATGGTGTGGTGTATAGAGAATGGTACATCACCAAATATA 8742
||| | || ||||| | ||||| |||||||| |||||||||||||| ||| | |||
Sbjct 885 CAAGTGATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATA 826
Query 8743 AACGGGATGTGGGTCATGATGGACGGTGAGGAACAAGTGGAATTTCCTTTGAAACCAATC 8802
|| | ||||| |||||||| || || ||||| || | ||| | || || |
Sbjct 825 TCTGGTGTCTGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTG 766
Query 8803 ATAGACAACGCCAAACCCACATTACGGCAAATAATGGCCCATTTCAGTAACGTTGCTGAA 8862
|| || | || | || |||| ||||||| ||||| || || ||||||| || |||
Sbjct 765 ATTGAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAA 706
Query 8863 GCGTATATTGAAAAGCGTAA--CCAC-GAGCGACCATACATGCCACGCTATGGTCTTCAG 8919
|| || |||| ||| | || | || ||| | |||||||| || ||||| | ||
Sbjct 705 GCATACATTGCGAAGAGAAATGCTACTGAGAG---GTACATGCCGCGGTATGGAATCAAG 649
Query 8920 CGAAATTTAACCGACATGAGTCTAGCCCGGTTTGCTTTTGACTTTTATGAAATGACGTCA 8979
||||||| || ||||| || || || | | ||||| ||||| ||||| ||| ||
Sbjct 648 AGAAATTTGACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCG 589
Query 8980 AAGACACCAGTTAGGGCTCGTGAAGCACACATCCAAATGAAAGCAGCAGCATTGCGTGGA 9039
|| ||||| | ||||||||| ||||| ||||| || ||||| || ||||| ||||
Sbjct 588 AAAACACCTGATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCTGCGAAAC 529
Query 9040 GCAAAAAGAAATCTTTTTGGCTTGGATGGGAGTG-TAGGATCAACAGAGGAGAACACGGA 9098
| | | || | ||||| |||| || |||| ||| | ||| || || ||||||||
Sbjct 528 ACCAGTCGCAAAATGTTTGGTATGGACGGCAGTGTTAGTAACAA-GGAAGAAAACACGGA 470
Query 9099 GAGACACACCACCGACGATGTGAGTAGGGACATGCA 9134
||||||||| || ||||| | ||| ||||||||
Sbjct 469 GAGACACACAGTGGAAGATGTCAATAGAGACATGCA 434
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 29859631509168
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |