Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_030391.1 Length=9369 Score E Sequences producing significant alignments: (Bits) Value seq4616 217 9e-53 >seq4616 Length=1066 Score = 217 bits (240), Expect = 9e-53 Identities = 397/576 (69%), Gaps = 8/576 (1%) Strand=Plus/Minus Query 8563 CATCTCATTGACTACACACCAGACCAAGTGGATATTTCCAACACCAGAGCAACACAGCAA 8622 ||||| || | |||| || | ||| | || ||||| ||||| | || || || | Sbjct 1005 CATCTTCTTCAGTACAATCCGCAACAAATTGACATTTCTAACACTCGTGCCACTCATTCA 946 Query 8623 CAGTTCAACACCTGGTATGAGGGGGTTCGTGACGAATACGAACTCGATGATAGCAAAATG 8682 || || | | ||||||||||| || | | || || | || |||||| ||||| Sbjct 945 CAATTTGAGAAGTGGTATGAGGGAGTGAGGAATGATTATGGCCTTAATGATAATGAAATG 886 Query 8683 ACAGTAGTCCTGAATGGACTAATGGTGTGGTGTATAGAGAATGGTACATCACCAAATATA 8742 ||| | || ||||| | ||||| |||||||| |||||||||||||| ||| | ||| Sbjct 885 CAAGTGATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATA 826 Query 8743 AACGGGATGTGGGTCATGATGGACGGTGAGGAACAAGTGGAATTTCCTTTGAAACCAATC 8802 || | ||||| |||||||| || || ||||| || | ||| | || || | Sbjct 825 TCTGGTGTCTGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTG 766 Query 8803 ATAGACAACGCCAAACCCACATTACGGCAAATAATGGCCCATTTCAGTAACGTTGCTGAA 8862 || || | || | || |||| ||||||| ||||| || || ||||||| || ||| Sbjct 765 ATTGAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAA 706 Query 8863 GCGTATATTGAAAAGCGTAA--CCAC-GAGCGACCATACATGCCACGCTATGGTCTTCAG 8919 || || |||| ||| | || | || ||| | |||||||| || ||||| | || Sbjct 705 GCATACATTGCGAAGAGAAATGCTACTGAGAG---GTACATGCCGCGGTATGGAATCAAG 649 Query 8920 CGAAATTTAACCGACATGAGTCTAGCCCGGTTTGCTTTTGACTTTTATGAAATGACGTCA 8979 ||||||| || ||||| || || || | | ||||| ||||| ||||| ||| || Sbjct 648 AGAAATTTGACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCG 589 Query 8980 AAGACACCAGTTAGGGCTCGTGAAGCACACATCCAAATGAAAGCAGCAGCATTGCGTGGA 9039 || ||||| | ||||||||| ||||| ||||| || ||||| || ||||| |||| Sbjct 588 AAAACACCTGATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCTGCGAAAC 529 Query 9040 GCAAAAAGAAATCTTTTTGGCTTGGATGGGAGTG-TAGGATCAACAGAGGAGAACACGGA 9098 | | | || | ||||| |||| || |||| ||| | ||| || || |||||||| Sbjct 528 ACCAGTCGCAAAATGTTTGGTATGGACGGCAGTGTTAGTAACAA-GGAAGAAAACACGGA 470 Query 9099 GAGACACACCACCGACGATGTGAGTAGGGACATGCA 9134 ||||||||| || ||||| | ||| |||||||| Sbjct 469 GAGACACACAGTGGAAGATGTCAATAGAGACATGCA 434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 29859631509168