Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_030847.1 Length=9837 Score E Sequences producing significant alignments: (Bits) Value seq4616 107 1e-19 >seq4616 Length=1066 Score = 107 bits (118), Expect = 1e-19 Identities = 277/416 (67%), Gaps = 6/416 (1%) Strand=Plus/Minus Query 9012 AATGGGCTCATGGTGTGGTGTGTGGAGAATGGAACATCTCCCAACATAAATGGTGTGTGG 9071 ||||| | ||||| |||||| | |||||||| |||||||| ||||| |||||| ||| Sbjct 873 AATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCTGGTGTCTGG 814 Query 9072 ACCATGATGGAAGGTAATGAACAGATTGAGTATCCACTAAAACCTATAGTGGAGAATGCA 9131 |||||||| || | || |||| |||||| | || ||| | | ||| |||| Sbjct 813 GTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAGCATGCT 754 Query 9132 AAGCCAACACTCCGTCAAATTATGGCACATTTTTCTGATGTGGCGGAAGCGTATATCGAA 9191 | || || | | ||||||||||| || ||| | | | ||| ||||| || || | Sbjct 753 ACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCATACATTGCG 694 Query 9192 ATGCGCAATATGAAAGAGCCATATATGCCACGATATGGCTTGATTCGAAATTTGCGAGAT 9251 | | | ||| | ||| || ||||| || ||||| | | |||||||| || Sbjct 693 AAGAGAAATGCTACTGAGAGGTACATGCCGCGGTATGGAATCAAGAGAAATTTGACTGAC 634 Query 9252 ACAAGTCTCGCACGGTATGCATTTGATTTCTACGAAATTAACTCGCGTACACCAGCCCGA 9311 | || ||||| | || || || || ||||| || | || ||| ||||| | | Sbjct 633 ATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAACACCTGATAGG 574 Query 9312 GCAAAAGAAGCAGTAATGCAAATGAAAGCAGCCGCCCTG-AAATCATCTCAG-AGCAGAA 9369 || ||||| ||||| ||||| || || || ||| || || ||| ||| || Sbjct 573 GCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCTGCGAAACA--CCAGTCGCAAAA 516 Query 9370 TGTTTGGACTGGATGGTGGCATAAGCACACAA-GAGGAAAACACAGAAAGGCACAC 9424 ||||||| |||| || | | || | |||| || |||||||| || || ||||| Sbjct 515 TGTTTGGTATGGACGGCAGTGTTAGTA-ACAAGGAAGAAAACACGGAGAGACACAC 461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 31356932221296