Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_031339.1 Length=10154 Score E Sequences producing significant alignments: (Bits) Value seq4616 138 7e-29 >seq4616 Length=1066 Score = 138 bits (152), Expect = 7e-29 Identities = 302/450 (67%), Gaps = 2/450 (0%) Strand=Plus/Minus Query 9474 GTTATGGTCAATGGATTTATAGTATGGTGTATTGACAATGGAACATCACCAAATTTGAAT 9533 || ||| | ||||| || || || |||||||| || ||||| ||||| ||| | | | Sbjct 882 GTGATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCT 823 Query 9534 GGAGAGTGGGTAATGATGGATGGCGAGGAACAAGTCACATTTAATTTACAGCCAATGATC 9593 || | ||||| ||||||||||| || ||||| | | | |||| |||| Sbjct 822 GGTGTCTGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATT 763 Query 9594 GAACATGCCAAACCCACTCTTCGCCAAGTCATGGCCCATTACAGTAACGTAGCTGAAACG 9653 || ||||| | || | || | ||| | ||||| || | ||||||| || ||| | Sbjct 762 GAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCA 703 Query 9654 TATATTGTAATGAGAAATGC-AGAGAAACCATACATGCCGAGGTATGGCCTTCAGCGAAA 9712 || |||| | ||||||||| | || | ||||||||| ||||||| | || |||| Sbjct 702 TACATTGCGAAGAGAAATGCTACTGAGA-GGTACATGCCGCGGTATGGAATCAAGAGAAA 644 Query 9713 TTTAACCGATATGAGCTTGGCAAGATATGCATTCGATTTCTATCGAATCACATCTAAAAC 9772 ||| || || || ||| | || ||||| || ||||| |||||| | | || ||||| Sbjct 643 TTTGACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAAC 584 Query 9773 TCCACCACGAGCCAGAGAAGCCGTTTTTCAAATGAAAGCAGCAGCATTACGCAACGTAAA 9832 || | || | ||||| | || ||||| || ||||| | || ||| | Sbjct 583 ACCTGATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCTGCGAAACACCAG 524 Query 9833 GAATAATCTATTTGGTCTCGATGGAAATGTCGGTAGCAAGGAGGAGAACACGGAGCGACA 9892 || | |||||| | || || | ||| ||| |||||| || ||||||||| |||| Sbjct 523 TCGCAAAATGTTTGGTATGGACGGCAGTGTTAGTAACAAGGAAGAAAACACGGAGAGACA 464 Query 9893 CACAGCGGATGATGTTAACCGCAACATGCA 9922 ||||| ||| ||||| || | ||||||| Sbjct 463 CACAGTGGAAGATGTCAATAGAGACATGCA 434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 32371129498528