Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq17689 98.7 6e-17 seq12455 98.7 6e-17 seq10585 98.7 6e-17 seq9570 98.7 6e-17 seq9231 98.7 6e-17 seq9165 98.7 6e-17 seq8596 98.7 6e-17 seq6186 98.7 6e-17 seq5127 98.7 6e-17 seq1727 98.7 6e-17 seq7466 95.1 7e-16 seq6706 95.1 7e-16 seq4488 95.1 7e-16 seq4041 95.1 7e-16 seq3946 95.1 7e-16 seq7764 91.5 8e-15 seq6381 91.5 8e-15 seq6718 78.8 5e-11 >seq17689 Length=17873 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 756 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 815 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 816 GTATTAGCTCT 826 >seq12455 Length=2255 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 683 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 742 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 743 GTATTAGCTCT 753 >seq10585 Length=1895 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 303 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 362 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 363 GTATTAGCTCT 373 >seq9570 Length=1752 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 393 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 452 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 453 GTATTAGCTCT 463 >seq9231 Length=1709 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 416 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 357 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 356 GTATTAGCTCT 346 >seq9165 Length=1699 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 205 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 264 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 265 GTATTAGCTCT 275 >seq8596 Length=1634 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1261 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 1202 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 1201 GTATTAGCTCT 1191 >seq6186 Length=1350 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 727 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 668 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 667 GTATTAGCTCT 657 >seq5127 Length=1174 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 473 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 414 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 413 GTATTAGCTCT 403 >seq1727 Length=11058 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7440 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 7499 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 7500 GTATTAGCTCT 7510 >seq7466 Length=1502 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || |||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 498 GCCCGCGTCGACCTTTTATTTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 439 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 438 GTATTAGCTCT 428 >seq6706 Length=1416 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 445 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCATAAGTCGGGGTTTGTTGCAC 386 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 385 GTATTAGCTCT 375 >seq4488 Length=1029 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || |||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 525 GCCCGCGTCGACCTTTTATATAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 584 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 585 GTATTAGCTCT 595 >seq4041 Length=892 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || |||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 688 GCCCGCGTCGACCTTTTATATAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 747 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 748 GTATTAGCTCT 758 >seq3946 Length=868 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || |||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 484 GCCCGCGTCGACCTTTTATATAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 543 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 544 GTATTAGCTCT 554 >seq7764 Length=1534 Score = 91.5 bits (100), Expect = 8e-15 Identities = 65/71 (92%), Gaps = 3/71 (4%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 160 GCCCGCGTCGACCTTT-ATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 218 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 219 GTATTAGCTCT 229 >seq6381 Length=1376 Score = 91.5 bits (100), Expect = 8e-15 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGC 8902 || || || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 475 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGC 418 >seq6718 Length=1417 Score = 78.8 bits (86), Expect = 5e-11 Identities = 57/65 (88%), Gaps = 1/65 (2%) Strand=Plus/Plus Query 8846 CTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 8905 |||| ||||||||||||||||||||||||| ||||| ||||||| | ||||||||||| Sbjct 766 CTCGCATTGACCTTTTATCTAATAAATGCATTCCTTCTAGAAGTCAGAATTTGTTGCACG 825 Query 8906 -ATTG 8909 |||| Sbjct 826 TATTG 830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28400723122992