Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_034208.1 Length=9555 Score E Sequences producing significant alignments: (Bits) Value seq4616 172 3e-39 seq4566 84.2 1e-12 >seq4616 Length=1066 Score = 172 bits (190), Expect = 3e-39 Identities = 373/549 (68%), Gaps = 8/549 (1%) Strand=Plus/Minus Query 8704 CACCTACTTGATTACACACCTCAGCAAGTTGATATCTCAAACACAAGAGCGACGCAATCT 8763 || || ||| | |||| || || ||| |||| || || ||||| | || || || || Sbjct 1005 CATCTTCTTCAGTACAATCCGCAACAAATTGACATTTCTAACACTCGTGCCACTCATTCA 946 Query 8764 CAATTTGACACGTGGTATGAGGCAGTTCAAAAATCAT-ACGACATAGGAGATAGTGAGAT 8822 |||||||| | ||||||||||| ||| | ||| || | | | | |||| ||| || Sbjct 945 CAATTTGAGAAGTGGTATGAGGGAGTG-AGGAATGATTATGGCCTTAATGATAATGAAAT 887 Query 8823 GCCTACGGTTATGAACGGGTTAATGGTTTGGTGCATAGAAAATGGAACCTCGCCAAACAT 8882 || | | | || || || ||||||||||| || || ||||| || || ||| |||| Sbjct 886 GCAAGTGATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACAT 827 Query 8883 CAATGGAGTATGGGTTATGATGGATGGGTCAGAACAAGTTGAGTACCCCCTCAAACCTAT 8942 ||| || |||||||||||||||||| | |||||||| || || |||| ||| | Sbjct 826 ATCTGGTGTCTGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTT 767 Query 8943 CGTCGAAAATGCAAAACCAACACTCAGGCAGATTATGGCACACTTCTCAGATGTTGCAGA 9002 | || |||| | || || | ||||| |||||||| ||||| | | ||||| Sbjct 766 GATTGAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGA 707 Query 9003 AGCGTATATTGAAATGCGCAACAAAAAGGAACCGTATATGCCACGATACGGTTTAGTTCG 9062 ||| || |||| | | | || | || ||| ||||| || || || | | Sbjct 706 AGCATACATTGCGAAGAGAAATGCTACTGAGAGGTACATGCCGCGGTATGGAATCAAGAG 647 Query 9063 AAATTTACGAGACATGAGCTTAGCACGCTATGCATTTGATTTCTATGAAATCACGTCTCA 9122 |||||| ||||| ||| | || | || || || || |||||||| | | || | Sbjct 646 AAATTTGACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAA 587 Query 9123 CACATCAGTTCGGGCTCGCGAAGCACACATTCAGATGAAAGCAGCAGCTTTG-AAATCAG 9181 ||| | | | ||||||||||||| ||||| |||||||| || ||||| || || || Sbjct 586 AACACCTGATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCTGCGAAACA- 528 Query 9182 CACAAACGC-GAATGTTTGGATTAGATGGTGGCATCAGTACACAA-GAGGAAAACACAGA 9239 || ||| ||||||||| | || || | | |||| |||| || |||||||| || Sbjct 527 -CCAGTCGCAAAATGTTTGGTATGGACGGCAGTGTTAGTA-ACAAGGAAGAAAACACGGA 470 Query 9240 AAGACACAC 9248 |||||||| Sbjct 469 GAGACACAC 461 >seq4566 Length=1050 Score = 84.2 bits (92), Expect = 1e-12 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 8586 GAAAGAAAAAGATGTCAATGTTGGGACTTCTGGAACACACACTGTACCACGAATCAAAGC 8645 || ||| | |||||||||||||||||| |||||| |||||| || |||| ||| | Sbjct 843 GAGAGATAGAGATGTCAATGTTGGGACCAGTGGAACTTTCACTGTTCCGAGAATTAAATC 902 Query 8646 AATTACGTCAAAGATGAGAATGCCGAAGGCAAAAGGTACAACAGCACTCAATCTTGAGCA 8705 | |||| |||||| | |||| || || | || | || ||| | | || Sbjct 903 ATTTACTGATAAGATGGTTCTACCGAGAATTAAGGGGAAGACTGTCCTTAATTTAAATCA 962 Query 8706 CCTACTTGATTACACACCTCAGCAAGTTGATATCTCAAACACAAGAGCGACGCAATCTCA 8765 || ||| | |||| || || ||| |||| || || ||||| | || || || || || Sbjct 963 TCTTCTTCAGTACAATCCGCAACAAATTGACATTTCTAACACTCGTGCCACTCATTCACA 1022 Query 8766 ATTTGACACGTGGTATGAGGCAGT 8789 |||||| | ||||||||||| ||| Sbjct 1023 ATTTGAGAAGTGGTATGAGGGAGT 1046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30454712561424