Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq355675 156 2e-34 seq18321 143 1e-30 seq298583 129 2e-26 seq306987 122 3e-24 seq452701 116 1e-22 seq11352 114 5e-22 seq357706 96.9 1e-16 >seq355675 Length=224 Score = 156 bits (172), Expect = 2e-34 Identities = 106/119 (89%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 1 CTTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCC 60 |||||||||||||||||| |||||| |||||| | | |||| ||||| | ||| ||||| Sbjct 106 CTTTATGATACTATGCAATTTGTGCAACCAGATGTACATACAATATGCATGGGAGTAGCC 165 Query 61 GCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||| Sbjct 166 GCTTCAATGGGATCTTTGATCCTGGTCGGGGGAGAAATTACCAAACGTCTAGCATTCCC 224 >seq18321 Length=5457 Score = 143 bits (158), Expect = 1e-30 Identities = 103/119 (87%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 1 CTTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCC 60 |||||||||||||||||| |||||| |||||| | | |||| ||||| | ||| ||| Sbjct 1620 CTTTATGATACTATGCAATTTGTGCAACCAGATGTACATACAATATGCATGGGAGCAGCT 1561 Query 61 GCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||||||||||| | ||||| ||||| ||||||||||||||||||||||||||||| Sbjct 1560 GCTTCAATGGGATCTTTGATCCTAGTCGGGGGAGAAATTACCAAACGTCTAGCATTCCC 1502 >seq298583 Length=3573 Score = 129 bits (142), Expect = 2e-26 Identities = 100/118 (85%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 CTTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCC 60 |||||||||||||| ||| |||||| |||||| | | |||| ||||| | ||| |||| Sbjct 1138 CTTTATGATACTATTCAATTTGTGCAACCAGATGTACATACAATATGCATGGGAGCAGCC 1079 Query 61 GCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCC 118 ||||||| ||||| || ||||||||||| | |||||||||||||||||||||||||| Sbjct 1078 GCTTCAAAGGGATTTG--ATCCTGGTCGGGGAAGAAATTACCAAACGTCTAGCATTCC 1023 >seq306987 Length=9584 Score = 122 bits (134), Expect = 3e-24 Identities = 97/117 (83%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||| || |||||||||||||| |||||| ||| || | ||||| |||||| || || Sbjct 2879 TTTATAATGTTATGCAAATTGTGCAACCAGATTTCCATATAATATGCATAGGATCAGTCG 2938 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCC 118 |||||| ||| | ||||||| |||||| ||||||||||||||||| ||||||||| Sbjct 2939 CTTCAACAAGATATTTTATCCTAGTCGGAAGAGAAATTACCAAACGTTTAGCATTCC 2995 >seq452701 Length=1093 Score = 116 bits (128), Expect = 1e-22 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 1 CTTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCC 60 ||||||||||| || ||| |||||| || ||| | | |||| ||||| | ||| ||||| Sbjct 171 CTTTATGATACCATTCAATTTGTGCAACTAGATGTACATACAATATGCATGGGAGTAGCC 112 Query 61 GCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||||||||||| ||||| ||| |||||||||||||||| |||||| ||||| Sbjct 111 GCTTCAATGGGATCTTCGATCCTTCTCGAGGGAGAAATTACCAAACATCTAGCGTTCCC 53 >seq11352 Length=11669 Score = 114 bits (126), Expect = 5e-22 Identities = 81/93 (87%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 27 ACCAGAAATCCGTACAGTATGCGTAGGATTAGCCGCTTCAATGGGATCTGTTATCCTGGT 86 |||||| | | |||| ||||| | ||| ||||||||||||||||||| | |||||||| Sbjct 10271 ACCAGATGTACATACAATATGCATGGGAGCAGCCGCTTCAATGGGATCTTTGATCCTGGT 10212 Query 87 CGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||| ||||||||||||||||||||||||||||| Sbjct 10211 CGGGGGAGAAATTACCAAACGTCTAGCATTCCC 10179 >seq357706 Length=226 Score = 96.9 bits (106), Expect = 1e-16 Identities = 59/63 (94%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 57 AGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATT 116 ||||||||||||||||||| | ||||||||||| ||||||||||||||||||| |||||| Sbjct 219 AGCCGCTTCAATGGGATCTTTGATCCTGGTCGGGGGAGAAATTACCAAACGTCCAGCATT 160 Query 117 CCC 119 ||| Sbjct 159 CCC 157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 18949759102080