Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq116058 136 2e-28 seq1057 136 2e-28 >seq116058 Length=476 Score = 136 bits (150), Expect = 2e-28 Identities = 101/118 (86%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||| | |||||| | | ||| ||||| | ||||| |||| Sbjct 299 TTTATGATACTATGCAATTTGTACAACCAGATGTACAGACAATATGCATGGGATTGGCCG 358 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||| |||||| || | |||||||| ||||||||||||||||||||||||||||| Sbjct 359 CTTCAATAGGATCTTTTCTTCTGGTCGGGGGAGAAATTACCAAACGTCTAGCATTCCC 416 >seq1057 Length=119964 Score = 136 bits (150), Expect = 2e-28 Identities = 101/118 (86%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||| | |||||| | | ||| ||||| | ||||| |||| Sbjct 16871 TTTATGATACTATGCAATTTGTACAACCAGATGTACAGACAATATGCATGGGATTGGCCG 16930 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||| |||||| || | |||||||| ||||||||||||||||||||||||||||| Sbjct 16931 CTTCAATAGGATCTTTTCTTCTGGTCGGGGGAGAAATTACCAAACGTCTAGCATTCCC 16988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19018570739520