Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq119616 95.1 7e-16 seq118146 95.1 7e-16 seq111195 95.1 7e-16 seq110150 95.1 7e-16 seq106466 95.1 7e-16 seq97693 95.1 7e-16 seq89721 95.1 7e-16 seq75078 95.1 7e-16 seq106937 93.3 2e-15 seq19437 93.3 2e-15 seq116636 89.7 3e-14 seq57023 89.7 3e-14 seq24584 89.7 3e-14 seq85697 87.8 1e-13 seq58021 87.8 1e-13 seq51465 87.8 1e-13 seq17739 87.8 1e-13 seq562 84.2 1e-12 >seq119616 Length=504 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 408 GCCCGCGTCGGCCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 467 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 468 GTATTAGCTCT 478 >seq118146 Length=517 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 78 GCCCGCGTCGGCCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 19 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 18 GTATTAGCTCT 8 >seq111195 Length=587 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 326 GCCCGCGTCGGCCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 385 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 386 GTATTAGCTCT 396 >seq110150 Length=599 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 258 GCCCGCGTCGGCCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 199 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 198 GTATTAGCTCT 188 >seq106466 Length=636 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 554 GCCCGCGTCGGCCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 495 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 494 GTATTAGCTCT 484 >seq97693 Length=745 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 GCCCGCGTCGGCCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 599 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 600 GTATTAGCTCT 610 >seq89721 Length=858 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 473 GCCCGCGTCGGCCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 532 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 533 GTATTAGCTCT 543 >seq75078 Length=1139 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 192 GCCCGCGTCGGCCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 251 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 252 GTATTAGCTCT 262 >seq106937 Length=635 Score = 93.3 bits (102), Expect = 2e-15 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 408 GCCCGCGTCGGCCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 467 Query 8905 G 8905 | Sbjct 468 G 468 >seq19437 Length=8102 Score = 93.3 bits (102), Expect = 2e-15 Identities = 58/60 (97%), Gaps = 2/60 (3%) Strand=Plus/Minus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 1031 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 972 >seq116636 Length=529 Score = 89.7 bits (98), Expect = 3e-14 Identities = 56/58 (97%), Gaps = 2/58 (3%) Strand=Plus/Plus Query 8858 TTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 212 TTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 269 >seq57023 Length=1829 Score = 89.7 bits (98), Expect = 3e-14 Identities = 49/49 (100%), Gaps = 0/49 (0%) Strand=Plus/Plus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 693 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 741 >seq24584 Length=5192 Score = 89.7 bits (98), Expect = 3e-14 Identities = 64/71 (90%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || | |||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 3580 GCCCGCGTCGGCCTTTTATCTAATAAATGCATCCCCTCCAGAAGTCGGGGTTTGTTGCAC 3639 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 3640 GTATTAGCTCT 3650 >seq85697 Length=921 Score = 87.8 bits (96), Expect = 1e-13 Identities = 65/72 (90%), Gaps = 3/72 (4%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAAT-GCATCCCTTCCAGAAGTCGGGGTTTGTTGCA 8903 || || || | ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 756 GCCCGCGTCGGCCTTTTATCTAATAAATAGCATCCCTTCCAGAAGTCGGGGTTTGTTGCA 697 Query 8904 CG-ATT-GCTCT 8913 || ||| ||||| Sbjct 696 CGTATTAGCTCT 685 >seq58021 Length=1773 Score = 87.8 bits (96), Expect = 1e-13 Identities = 57/60 (95%), Gaps = 2/60 (3%) Strand=Plus/Plus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 ||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||| Sbjct 262 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCAGGGTTTGTTGCACGTATTAGCTCT 321 >seq51465 Length=1236 Score = 87.8 bits (96), Expect = 1e-13 Identities = 57/60 (95%), Gaps = 2/60 (3%) Strand=Plus/Minus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 |||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||| Sbjct 565 CCTTTTATCTAATAAATGAATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 506 >seq17739 Length=9458 Score = 87.8 bits (96), Expect = 1e-13 Identities = 57/60 (95%), Gaps = 2/60 (3%) Strand=Plus/Plus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||| Sbjct 5589 CCTTTTATCTAATAAATGCATCCCTTCTAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 5648 >seq562 Length=112835 Score = 84.2 bits (92), Expect = 1e-12 Identities = 56/60 (93%), Gaps = 2/60 (3%) Strand=Plus/Plus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 || |||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||| Sbjct 3158 CCGTTTATCTAATAAATGCATCCCTACCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 3217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28363708696092