Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq33665 154 6e-34 seq36965 150 7e-33 seq67778 141 4e-30 seq25112 141 4e-30 seq43208 136 2e-28 seq42470 131 6e-27 seq72622 127 8e-26 seq71010 123 9e-25 seq71790 122 3e-24 seq32734 118 4e-23 seq39305 111 6e-21 seq58246 109 2e-20 seq76838 105 3e-19 seq75679 104 9e-19 >seq33665 Length=927 Score = 154 bits (170), Expect = 6e-34 Identities = 105/118 (89%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||| | ||| || ||| |||| ||||| | || ||||||| Sbjct 162 TTTATGATACTATGCAATTTGTACGACCGGATGTCCATACAATATGCATGGGGTTAGCCG 103 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 102 CTTCAATGGGATCTTTTATCTTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 45 >seq36965 Length=436 Score = 150 bits (166), Expect = 7e-33 Identities = 104/118 (88%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||| | ||| || ||| |||| ||||| |||| ||||||| Sbjct 237 TTTATGATACTATGCAATTTGTACGACCGGATGTCCATACAATATGCATAGGGTTAGCCG 178 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||| |||| | |||||||||||||||||||||||||||||| |||||||||||| Sbjct 177 CTTCAATAGGATTTTTTATCCTGGTCGGAGGAGAAATTACCAAACATCTAGCATTCCC 120 >seq67778 Length=12709 Score = 141 bits (156), Expect = 4e-30 Identities = 102/118 (86%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||| ||||||||||| |||| ||| | ||| |||| ||||| |||| ||||||| Sbjct 3182 TTTATAATACTATGCAATTTGTATGACCGGGTGTCCATACAATATGCATAGGGTTAGCCG 3241 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 3242 CTTCAATGGGATCTTTTATCCTGGTCAAAGGAGAAATTACCAAACGTCTAGCATTCCC 3299 >seq25112 Length=34299 Score = 141 bits (156), Expect = 4e-30 Identities = 102/118 (86%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||| ||||||| |||| | ||| || ||| |||| ||||| |||| ||||||| Sbjct 11357 TTTATGATATTATGCAATTTGTTCGACCGGATGTCCATACAATATGCATAGGGTTAGCCG 11416 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||| ||||||||||||||||||||| |||||| ||| || Sbjct 11417 CTTCAATGGGATCTTTTATCCTAGTCGGAGGAGAAATTACCAAAAGTCTAGTATTTCC 11474 >seq43208 Length=17015 Score = 136 bits (150), Expect = 2e-28 Identities = 101/118 (86%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||| | ||| || ||| |||| ||||| | || ||||||| Sbjct 7790 TTTATGATACTATGCAATTTGTACGACCGGATGTCCATACAATATGCATGGGGTTAGCCG 7849 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||| |||||||| |||||||| || ||||||||||||||||| |||||||||| || Sbjct 7850 CTTCATTGGGATCTTTTATCCTGATCAGAGGAGAAATTACCAAATGTCTAGCATTTCC 7907 >seq42470 Length=23698 Score = 131 bits (144), Expect = 6e-27 Identities = 101/119 (85%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||| |||||| ||| |||| ||||| | || |||| | Sbjct 19965 TTTATGATACTATGCAATTTGTATGACCAGATGTCCATACAATATGCATGGGGTTAGACA 20024 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAG-AAATTACCAAACGTCTAGCATTCCC 119 ||| |||||||||| ||||||| |||||||||| |||||| |||||||||||||||||| Sbjct 20025 CTTTAATGGGATCTTTTATCCTTGTCGGAGGAGAAAATTAGCAAACGTCTAGCATTCCC 20083 >seq72622 Length=60282 Score = 127 bits (140), Expect = 8e-26 Identities = 99/118 (84%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||| ||||||||| | | |||| | |||| ||| |||| ||||| | || ||||| | Sbjct 44208 TTTTTGATACTATACGATTTGTATGATCAGATGTCCATACAATATGCATGGGGTTAGCTG 44267 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 44268 CTTCAATGGGATATTTTATCCTGGTCAGAGGAGAAATTACCAAACGTCTAGCATTCCC 44325 >seq71010 Length=14215 Score = 123 bits (136), Expect = 9e-25 Identities = 97/116 (84%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||| | || | ||| |||| ||||| | || ||||| Sbjct 8010 TTTATGATACTATGCAATTTGTACGGCCGAATGTCCATACAATATGCATGGGGCCAGCCG 7951 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTC 117 |||||||||||||| |||| | |||||||||||||||||||||| ||||||||||| Sbjct 7950 CTTCAATGGGATCTTTTATTCGGGTCGGAGGAGAAATTACCAAATGTCTAGCATTC 7895 >seq71790 Length=61813 Score = 122 bits (134), Expect = 3e-24 Identities = 98/118 (83%), Gaps = 4/118 (3%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 |||||||| |||||||| |||| | | | ||| |||| ||||| | || ||||||| Sbjct 56424 TTTATGATCCTATGCAATTTGTAC----ACATGTCCATACAATATGCATGGGGTTAGCCG 56369 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||||||||| |||||||||||||||||| ||||| |||||| Sbjct 56368 CTTCAATGGGATCTTTTATCCTGGTTAGAGGAGAAATTACCAAACATCTAGTATTCCC 56311 >seq32734 Length=23271 Score = 118 bits (130), Expect = 4e-23 Identities = 97/118 (82%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 |||||||||||||| || | || | ||| | ||| |||| ||||| | || ||||| | Sbjct 8983 TTTATGATACTATGTAATTCGTACGACCGAATGTCCATACAATATGCATGGGGTTAGCTG 9042 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||| | ||| ||||||||||||||||| |||||||||||| Sbjct 9043 CTTCAATGGGATCTTTTATCATAGTCAGAGGAGAAATTACCAAATATCTAGCATTCCC 9100 >seq39305 Length=54168 Score = 111 bits (122), Expect = 6e-21 Identities = 96/118 (81%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||| | | | | | | |||| ||||| | | ||| ||| Sbjct 17392 TTTATGATACTATGCAATTTGTACGATCGAATGTTCATACAATATGCATGGAGTTAACCG 17333 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||||||||| ||||||||| ||||||||||||||||| ||| |||||||||| Sbjct 17332 TTTCAATGGGATCTTTTATCCTGGCCGGAGGAGAAATTACCAGACG--TAGCATTCCC 17277 >seq58246 Length=2598 Score = 109 bits (120), Expect = 2e-20 Identities = 95/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 || || |||||||| || |||| | ||| || | | |||| |||| ||| |||| || Sbjct 758 TTAATTATACTATGTAATTTGTACGACCGGATGTTCATACAATATGTATAGTGTTAGTCG 699 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||||||||| |||| ||| | |||||||||||||| ||||||||||||||||| Sbjct 698 TTTCAATGGGATCTTTTATTCTGATTGGAGGAGAAATTACTAAACGTCTAGCATTCCC 641 >seq76838 Length=4765 Score = 105 bits (116), Expect = 3e-19 Identities = 94/118 (80%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 || || |||||||| || |||| | ||| || | | |||| ||||| ||| | || || Sbjct 3303 TTAATTATACTATGTAATTTGTACGACCGGATGTTCATACAATATGCATAGAGTCAGTCG 3362 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||| | ||| |||||||||||||| |||| ||||||||| || Sbjct 3363 CTTCAATGGGATCTTTTATTCCGGTTGGAGGAGAAATTACTAAACTTCTAGCATTTCC 3420 >seq75679 Length=100637 Score = 104 bits (114), Expect = 9e-19 Identities = 63/67 (94%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 52 GGATTAGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTA 111 || ||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||| Sbjct 70790 GGGTTAGCCGCTTCAATGGGATCTTTTATCCTGGTCAGAGGCGAAATTACCAAACGTCTA 70849 Query 112 GCATTCC 118 ||||||| Sbjct 70850 GCATTCC 70856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19029879807360