Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_033774.1
Length=8913
Score E
Sequences producing significant alignments: (Bits) Value
seq21958 95.1 7e-16
seq65559 89.7 3e-14
seq50813 89.7 3e-14
seq44858 89.7 3e-14
seq61328 87.8 1e-13
seq36631 87.8 1e-13
seq65413 86.0 4e-13
seq62200 86.0 4e-13
seq39516 86.0 4e-13
seq69797 84.2 1e-12
seq61460 84.2 1e-12
seq54522 84.2 1e-12
seq68911 82.4 4e-12
seq71286 80.6 2e-11
seq73434 78.8 5e-11
seq63777 78.8 5e-11
>seq21958
Length=16505
Score = 95.1 bits (104), Expect = 7e-16
Identities = 65/71 (92%), Gaps = 2/71 (3%)
Strand=Plus/Plus
Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904
|| ||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2016 GCCCGTATCGACCTTTTATCTAATAAATGCATCCTTTCCAGAAGTCGGGGTTTGTTGCAC 2075
Query 8905 G-ATT-GCTCT 8913
| ||| |||||
Sbjct 2076 GTATTAGCTCT 2086
>seq65559
Length=45067
Score = 89.7 bits (98), Expect = 3e-14
Identities = 54/57 (95%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 8848 CGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904
||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 20892 CGTGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCAGGGTTTATTGCAC 20948
Score = 84.2 bits (92), Expect = 1e-12
Identities = 61/68 (90%), Gaps = 2/68 (3%)
Strand=Plus/Plus
Query 8848 CGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-A 8906
|| || ||||||||||||||||||||||||||||||||||| | ||||||||| |||| |
Sbjct 12534 CGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGACAGGGTTTGTTACACGTA 12593
Query 8907 TT-GCTCT 8913
|| |||||
Sbjct 12594 TTAGCTCT 12601
>seq50813
Length=9208
Score = 89.7 bits (98), Expect = 3e-14
Identities = 64/71 (90%), Gaps = 2/71 (3%)
Strand=Plus/Minus
Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904
||||| || ||| ||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 8621 GCTCGCGTCGACATTTTATCTAATAAATGCATCCCTTCTAGAAGTCAGGGTTTGTTGCAC 8562
Query 8905 G-ATT-GCTCT 8913
| ||| |||||
Sbjct 8561 GTATTAGCTCT 8551
>seq44858
Length=27572
Score = 89.7 bits (98), Expect = 3e-14
Identities = 64/71 (90%), Gaps = 2/71 (3%)
Strand=Plus/Plus
Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904
|| || || ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 23195 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCTTTCCAGAAGTCGGGGTTTGTTGCAT 23254
Query 8905 G-ATT-GCTCT 8913
| ||| |||||
Sbjct 23255 GTATTAGCTCT 23265
>seq61328
Length=6345
Score = 87.8 bits (96), Expect = 1e-13
Identities = 58/62 (94%), Gaps = 2/62 (3%)
Strand=Plus/Minus
Query 8854 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCT 8911
||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||| |||
Sbjct 4015 GACCTTTTATCTAATAACTGCATCCCTTTCAGAAGTCGGGGTTTGTTGCACGTATTAGCT 3956
Query 8912 CT 8913
||
Sbjct 3955 CT 3954
>seq36631
Length=37147
Score = 87.8 bits (96), Expect = 1e-13
Identities = 58/62 (94%), Gaps = 2/62 (3%)
Strand=Plus/Plus
Query 8854 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCT 8911
||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||| |||
Sbjct 27221 GACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGAGGTTTGTTGCACGTATTAGCT 27280
Query 8912 CT 8913
||
Sbjct 27281 CT 27282
>seq65413
Length=23665
Score = 86.0 bits (94), Expect = 4e-13
Identities = 63/71 (89%), Gaps = 2/71 (3%)
Strand=Plus/Plus
Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904
|| || || ||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1588 GCCCGCGTCGACCTTTTATCTAATAAATTTATCCATTCCAGAAGTCGGGGTTTGTTGCAC 1647
Query 8905 G-ATT-GCTCT 8913
| ||| |||||
Sbjct 1648 GTATTAGCTCT 1658
>seq62200
Length=3373
Score = 86.0 bits (94), Expect = 4e-13
Identities = 58/61 (95%), Gaps = 3/61 (5%)
Strand=Plus/Minus
Query 8855 ACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTC 8912
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||
Sbjct 759 ACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTC-GGGTTTGTTGCACGTATTAGCTC 701
Query 8913 T 8913
|
Sbjct 700 T 700
>seq39516
Length=4291
Score = 86.0 bits (94), Expect = 4e-13
Identities = 52/55 (95%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGT 8899
|| || || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2488 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGT 2542
>seq69797
Length=44808
Score = 84.2 bits (92), Expect = 1e-12
Identities = 51/54 (94%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904
|||||| |||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 25430 GTTGACTTTTTATTTAATAAATGCATCCCTTCCAGAAGTCGGGTTTTGTTGCAC 25483
Score = 80.6 bits (88), Expect = 2e-11
Identities = 49/52 (94%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 8854 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 8905
||||||||||||| |||||| ||||||||||||||||||||||| |||||||
Sbjct 9445 GACCTTTTATCTAGTAAATGAATCCCTTCCAGAAGTCGGGGTTTATTGCACG 9496
>seq61460
Length=9996
Score = 84.2 bits (92), Expect = 1e-12
Identities = 59/65 (91%), Gaps = 2/65 (3%)
Strand=Plus/Plus
Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908
|| |||||||||| |||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 8430 GTCGACCTTTTATTGAATAAATGCATCCCTTCCAGAAGTTGGGGTTTGTTGCACGTATTA 8489
Query 8909 GCTCT 8913
|||||
Sbjct 8490 GCTCT 8494
>seq54522
Length=14776
Score = 84.2 bits (92), Expect = 1e-12
Identities = 61/68 (90%), Gaps = 2/68 (3%)
Strand=Plus/Minus
Query 8848 CGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-A 8906
|| || ||||||||||||||||||||||||||||| ||||||||||||||||| || | |
Sbjct 2346 CGCGTCGACCTTTTATCTAATAAATGCATCCCTTCTAGAAGTCGGGGTTTGTTTCATGTA 2287
Query 8907 TT-GCTCT 8913
|| |||||
Sbjct 2286 TTAGCTCT 2279
>seq68911
Length=29414
Score = 82.4 bits (90), Expect = 4e-12
Identities = 50/53 (94%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCA 8903
|| ||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 25724 GTCGACCTTTTATCTAATAAATGCATCCTTTCTAGAAGTCGGGGTTTGTTGCA 25776
>seq71286
Length=22215
Score = 80.6 bits (88), Expect = 2e-11
Identities = 50/54 (93%), Gaps = 0/54 (0%)
Strand=Plus/Minus
Query 8850 TGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCA 8903
||| |||||| |||||||||||||||||||||||| |||||| |||||||||||
Sbjct 3966 TGTCGACCTTCTATCTAATAAATGCATCCCTTCCAAAAGTCGAGGTTTGTTGCA 3913
>seq73434
Length=31361
Score = 78.8 bits (86), Expect = 5e-11
Identities = 55/60 (92%), Gaps = 2/60 (3%)
Strand=Plus/Plus
Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913
|||||||||||||||||||| ||||||||||| ||| ||||||||||||| ||| |||||
Sbjct 2219 CCTTTTATCTAATAAATGCACCCCTTCCAGAATTCGAGGTTTGTTGCACGTATTAGCTCT 2278
>seq63777
Length=10903
Score = 78.8 bits (86), Expect = 5e-11
Identities = 53/58 (91%), Gaps = 1/58 (2%)
Strand=Plus/Minus
Query 8845 GCTCGTGTTGACCTTTTATCTAATAAA-TGCATCCCTTCCAGAAGTCGGGGTTTGTTG 8901
|| || || ||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 6095 GCCCGCGTCGACATTTTATCTAATAAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTG 6038
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 28381057301256
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |