Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq21958 95.1 7e-16 seq65559 89.7 3e-14 seq50813 89.7 3e-14 seq44858 89.7 3e-14 seq61328 87.8 1e-13 seq36631 87.8 1e-13 seq65413 86.0 4e-13 seq62200 86.0 4e-13 seq39516 86.0 4e-13 seq69797 84.2 1e-12 seq61460 84.2 1e-12 seq54522 84.2 1e-12 seq68911 82.4 4e-12 seq71286 80.6 2e-11 seq73434 78.8 5e-11 seq63777 78.8 5e-11 >seq21958 Length=16505 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || ||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 2016 GCCCGTATCGACCTTTTATCTAATAAATGCATCCTTTCCAGAAGTCGGGGTTTGTTGCAC 2075 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 2076 GTATTAGCTCT 2086 >seq65559 Length=45067 Score = 89.7 bits (98), Expect = 3e-14 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 8848 CGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 ||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||| Sbjct 20892 CGTGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCAGGGTTTATTGCAC 20948 Score = 84.2 bits (92), Expect = 1e-12 Identities = 61/68 (90%), Gaps = 2/68 (3%) Strand=Plus/Plus Query 8848 CGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-A 8906 || || ||||||||||||||||||||||||||||||||||| | ||||||||| |||| | Sbjct 12534 CGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGACAGGGTTTGTTACACGTA 12593 Query 8907 TT-GCTCT 8913 || ||||| Sbjct 12594 TTAGCTCT 12601 >seq50813 Length=9208 Score = 89.7 bits (98), Expect = 3e-14 Identities = 64/71 (90%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 ||||| || ||| ||||||||||||||||||||||||| ||||||| ||||||||||||| Sbjct 8621 GCTCGCGTCGACATTTTATCTAATAAATGCATCCCTTCTAGAAGTCAGGGTTTGTTGCAC 8562 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 8561 GTATTAGCTCT 8551 >seq44858 Length=27572 Score = 89.7 bits (98), Expect = 3e-14 Identities = 64/71 (90%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 23195 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCTTTCCAGAAGTCGGGGTTTGTTGCAT 23254 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 23255 GTATTAGCTCT 23265 >seq61328 Length=6345 Score = 87.8 bits (96), Expect = 1e-13 Identities = 58/62 (94%), Gaps = 2/62 (3%) Strand=Plus/Minus Query 8854 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCT 8911 ||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||| ||| Sbjct 4015 GACCTTTTATCTAATAACTGCATCCCTTTCAGAAGTCGGGGTTTGTTGCACGTATTAGCT 3956 Query 8912 CT 8913 || Sbjct 3955 CT 3954 >seq36631 Length=37147 Score = 87.8 bits (96), Expect = 1e-13 Identities = 58/62 (94%), Gaps = 2/62 (3%) Strand=Plus/Plus Query 8854 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCT 8911 ||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||| ||| Sbjct 27221 GACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGAGGTTTGTTGCACGTATTAGCT 27280 Query 8912 CT 8913 || Sbjct 27281 CT 27282 >seq65413 Length=23665 Score = 86.0 bits (94), Expect = 4e-13 Identities = 63/71 (89%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||| |||| ||||||||||||||||||||||||| Sbjct 1588 GCCCGCGTCGACCTTTTATCTAATAAATTTATCCATTCCAGAAGTCGGGGTTTGTTGCAC 1647 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 1648 GTATTAGCTCT 1658 >seq62200 Length=3373 Score = 86.0 bits (94), Expect = 4e-13 Identities = 58/61 (95%), Gaps = 3/61 (5%) Strand=Plus/Minus Query 8855 ACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTC 8912 |||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||| Sbjct 759 ACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTC-GGGTTTGTTGCACGTATTAGCTC 701 Query 8913 T 8913 | Sbjct 700 T 700 >seq39516 Length=4291 Score = 86.0 bits (94), Expect = 4e-13 Identities = 52/55 (95%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGT 8899 || || || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2488 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGT 2542 >seq69797 Length=44808 Score = 84.2 bits (92), Expect = 1e-12 Identities = 51/54 (94%), Gaps = 0/54 (0%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 |||||| |||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 25430 GTTGACTTTTTATTTAATAAATGCATCCCTTCCAGAAGTCGGGTTTTGTTGCAC 25483 Score = 80.6 bits (88), Expect = 2e-11 Identities = 49/52 (94%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 8854 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 8905 ||||||||||||| |||||| ||||||||||||||||||||||| ||||||| Sbjct 9445 GACCTTTTATCTAGTAAATGAATCCCTTCCAGAAGTCGGGGTTTATTGCACG 9496 >seq61460 Length=9996 Score = 84.2 bits (92), Expect = 1e-12 Identities = 59/65 (91%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 || |||||||||| |||||||||||||||||||||||| ||||||||||||||| ||| Sbjct 8430 GTCGACCTTTTATTGAATAAATGCATCCCTTCCAGAAGTTGGGGTTTGTTGCACGTATTA 8489 Query 8909 GCTCT 8913 ||||| Sbjct 8490 GCTCT 8494 >seq54522 Length=14776 Score = 84.2 bits (92), Expect = 1e-12 Identities = 61/68 (90%), Gaps = 2/68 (3%) Strand=Plus/Minus Query 8848 CGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-A 8906 || || ||||||||||||||||||||||||||||| ||||||||||||||||| || | | Sbjct 2346 CGCGTCGACCTTTTATCTAATAAATGCATCCCTTCTAGAAGTCGGGGTTTGTTTCATGTA 2287 Query 8907 TT-GCTCT 8913 || ||||| Sbjct 2286 TTAGCTCT 2279 >seq68911 Length=29414 Score = 82.4 bits (90), Expect = 4e-12 Identities = 50/53 (94%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCA 8903 || ||||||||||||||||||||||||| ||| |||||||||||||||||||| Sbjct 25724 GTCGACCTTTTATCTAATAAATGCATCCTTTCTAGAAGTCGGGGTTTGTTGCA 25776 >seq71286 Length=22215 Score = 80.6 bits (88), Expect = 2e-11 Identities = 50/54 (93%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 8850 TGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCA 8903 ||| |||||| |||||||||||||||||||||||| |||||| ||||||||||| Sbjct 3966 TGTCGACCTTCTATCTAATAAATGCATCCCTTCCAAAAGTCGAGGTTTGTTGCA 3913 >seq73434 Length=31361 Score = 78.8 bits (86), Expect = 5e-11 Identities = 55/60 (92%), Gaps = 2/60 (3%) Strand=Plus/Plus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 |||||||||||||||||||| ||||||||||| ||| ||||||||||||| ||| ||||| Sbjct 2219 CCTTTTATCTAATAAATGCACCCCTTCCAGAATTCGAGGTTTGTTGCACGTATTAGCTCT 2278 >seq63777 Length=10903 Score = 78.8 bits (86), Expect = 5e-11 Identities = 53/58 (91%), Gaps = 1/58 (2%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAA-TGCATCCCTTCCAGAAGTCGGGGTTTGTTG 8901 || || || ||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 6095 GCCCGCGTCGACATTTTATCTAATAAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTG 6038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28381057301256