Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq217 127 8e-26 seq836 122 3e-24 >seq217 Length=57159 Score = 127 bits (140), Expect = 8e-26 Identities = 99/118 (84%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 |||||||||| |||||| |||| | |||||| | | |||| ||||| | || |||| | Sbjct 45764 TTTATGATACCATGCAATTTGTTCGACCAGATGTACATACAATATGCATGGGGTTAGTTG 45823 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||||| ||| ||||| |||||||||||||||||||||||||| |||||||||| Sbjct 45824 CTTCAATGGAATCCTTTATCATGGTCGGAGGAGAAATTACCAAACGTATAGCATTCCC 45881 >seq836 Length=462938 Score = 122 bits (134), Expect = 3e-24 Identities = 98/117 (84%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 |||||||||| |||||| |||| | |||||| | | |||| ||||| | || ||||| | Sbjct 6471 TTTATGATACCATGCAATTTGTTCGACCAGATGTACATACAATATGCATGGG-TTAGCTG 6529 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCC 118 ||||||||||||| ||||||||||||||||| |||||| ||||||| ||||| ||| Sbjct 6530 CTTCAATGGGATCATTTATCCTGGTCGGAGGATAAATTATCAAACGTTTAGCACTCC 6586 Score = 114 bits (126), Expect = 5e-22 Identities = 96/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 |||||||||| |||||| |||| | |||||| | | |||| ||||| | || ||||| | Sbjct 8836 TTTATGATACCATGCAATTTGTTCGACCAGATGTACATACAATATGCATGGGGTTAGCTG 8777 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||||||||| ||||||| |||| ||| |||| |||||||| | ||| |||||| Sbjct 8776 CTTCAATGGGATCCTTTATCCTTGTCGAAGGTGAAACTACCAAACATTTAGTATTCCC 8719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19045772331840