Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq2423 141 4e-30 seq2 141 4e-30 seq3210 136 2e-28 >seq2423 Length=6278355 Score = 141 bits (156), Expect = 4e-30 Identities = 102/118 (86%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 |||||||||| |||||| |||| | |||||| | | |||| ||||| | || ||||| | Sbjct 6106309 TTTATGATACCATGCAATTTGTTCGACCAGATGTACATACAATATGCATGGGGTTAGCTG 6106250 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 6106249 CTTCAATGGGATCCTTTATCCTGGTCGGAGGAGAAATTACCAAACGTTTAGCATTCCC 6106192 >seq2 Length=8241039 Score = 141 bits (156), Expect = 4e-30 Identities = 102/118 (86%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 |||||||||| |||||| |||| | |||||| | | |||| ||||| | || ||||| | Sbjct 8224990 TTTATGATACCATGCAATTTGTTCGACCAGATGTACATACAATATGCATGGGGTTAGCTG 8225049 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 8225050 CTTCAATGGGATCCTTTATCCTGGTCGGAGGAGAAATTACCAAACGTTTAGCATTCCC 8225107 >seq3210 Length=6607953 Score = 136 bits (150), Expect = 2e-28 Identities = 101/118 (86%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 |||||||||| |||||| |||| | |||| | | | |||||||||| | || ||||| | Sbjct 799507 TTTATGATACCATGCAATTTGTTCGACCATATGTACATACAGTATGCATGGGGTTAGCTG 799566 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||| Sbjct 799567 CTTCAATGGGATCCTTTATCCTGGTTGGAGGAGAAATTACCAAACGTTTAGCATTCCC 799624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19045673796480