Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq1276 104 1e-18 seq224 104 1e-18 seq2430 96.9 2e-16 seq403 93.3 2e-15 >seq1276 Length=108293 Score = 104 bits (114), Expect = 1e-18 Identities = 67/71 (94%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 67336 GCCCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGGTTTGTTGCAC 67395 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 67396 GTATTAGCTCT 67406 >seq224 Length=384964 Score = 104 bits (114), Expect = 1e-18 Identities = 67/71 (94%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10270 GCCCGCGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 10211 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 10210 GTATTAGCTCT 10200 >seq2430 Length=64440 Score = 96.9 bits (106), Expect = 2e-16 Identities = 58/61 (95%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || |||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 44211 GCCCGCGTTGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGGTTTGTTGCAC 44152 Query 8905 G 8905 | Sbjct 44151 G 44151 >seq403 Length=189262 Score = 93.3 bits (102), Expect = 2e-15 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || |||||||||||||||||||||||||||||||||| | ||||||||||||||||| Sbjct 94655 GCCCGCGTTGACCTTTTATCTAATAAATGCATCCCTTCCAAAGGTCGGGGTTTGTTGCAC 94714 Query 8905 G 8905 | Sbjct 94715 G 94715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28402821432744