Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_033774.1
Length=8913
Score E
Sequences producing significant alignments: (Bits) Value
seq1276 104 1e-18
seq224 104 1e-18
seq2430 96.9 2e-16
seq403 93.3 2e-15
>seq1276
Length=108293
Score = 104 bits (114), Expect = 1e-18
Identities = 67/71 (94%), Gaps = 2/71 (3%)
Strand=Plus/Plus
Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 67336 GCCCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGGTTTGTTGCAC 67395
Query 8905 G-ATT-GCTCT 8913
| ||| |||||
Sbjct 67396 GTATTAGCTCT 67406
>seq224
Length=384964
Score = 104 bits (114), Expect = 1e-18
Identities = 67/71 (94%), Gaps = 2/71 (3%)
Strand=Plus/Minus
Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 10270 GCCCGCGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 10211
Query 8905 G-ATT-GCTCT 8913
| ||| |||||
Sbjct 10210 GTATTAGCTCT 10200
>seq2430
Length=64440
Score = 96.9 bits (106), Expect = 2e-16
Identities = 58/61 (95%), Gaps = 0/61 (0%)
Strand=Plus/Minus
Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904
|| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 44211 GCCCGCGTTGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGGTTTGTTGCAC 44152
Query 8905 G 8905
|
Sbjct 44151 G 44151
>seq403
Length=189262
Score = 93.3 bits (102), Expect = 2e-15
Identities = 57/61 (93%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904
|| || |||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 94655 GCCCGCGTTGACCTTTTATCTAATAAATGCATCCCTTCCAAAGGTCGGGGTTTGTTGCAC 94714
Query 8905 G 8905
|
Sbjct 94715 G 94715
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 28402821432744
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |