Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq11318 114 5e-22 seq9471 114 5e-22 seq7440 114 5e-22 seq6848 114 5e-22 >seq11318 Length=753 Score = 114 bits (126), Expect = 5e-22 Identities = 96/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||| || | | ||| ||||| | ||||| |||| Sbjct 278 TTTATGATACTATGCAATTTGTGCGACCCGATGTACAGACAATATGCATGGGATTGGCCG 337 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 | || ||||| ||| || |||||| || |||| || ||||||||||||||||||||| Sbjct 338 CCTCCATGGGGTCTTTTCTCCTGGCCGCCGGAGCAAGTACCAAACGTCTAGCATTCCC 395 >seq9471 Length=1132384 Score = 114 bits (126), Expect = 5e-22 Identities = 96/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||| || | | ||| ||||| | ||||| |||| Sbjct 340990 TTTATGATACTATGCAATTTGTGCGACCCGATGTACAGACAATATGCATGGGATTGGCCG 341049 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 | || ||||| ||| || |||||| || |||| || ||||||||||||||||||||| Sbjct 341050 CCTCCATGGGGTCTTTTCTCCTGGCCGCCGGAGCAAGTACCAAACGTCTAGCATTCCC 341107 >seq7440 Length=327141 Score = 114 bits (126), Expect = 5e-22 Identities = 96/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||| || | | ||| ||||| | ||||| |||| Sbjct 117058 TTTATGATACTATGCAATTTGTGCGACCCGATGTACAGACAATATGCATGGGATTGGCCG 117117 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 | || ||||| ||| || |||||| || |||| || ||||||||||||||||||||| Sbjct 117118 CCTCCATGGGGTCTTTTCTCCTGGCCGCCGGAGCAAGTACCAAACGTCTAGCATTCCC 117175 >seq6848 Length=375620 Score = 114 bits (126), Expect = 5e-22 Identities = 96/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||| || | | ||| ||||| | ||||| |||| Sbjct 372510 TTTATGATACTATGCAATTTGTGCGACCCGATGTACAGACAATATGCATGGGATTGGCCG 372569 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 | || ||||| ||| || |||||| || |||| || ||||||||||||||||||||| Sbjct 372570 CCTCCATGGGGTCTTTTCTCCTGGCCGCCGGAGCAAGTACCAAACGTCTAGCATTCCC 372627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19043292907200