Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_015782.1 Length=7275 Score E Sequences producing significant alignments: (Bits) Value seq9694 95.1 6e-16 seq8249 91.5 7e-15 seq14494 89.7 2e-14 seq10360 89.7 2e-14 seq7695 89.7 2e-14 seq7440 89.7 2e-14 seq12071 87.8 8e-14 seq10672 87.8 8e-14 seq1913 87.8 8e-14 seq11083 86.0 3e-13 seq6759 86.0 3e-13 seq3664 86.0 3e-13 seq5479 84.2 1e-12 seq12706 80.6 1e-11 seq10694 80.6 1e-11 seq7784 80.6 1e-11 seq8429 78.8 4e-11 >seq9694 Length=165025 Score = 95.1 bits (104), Expect = 6e-16 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | |||||||||||| | |||| |||||||||||| | Sbjct 115811 ACACAAACATCTAACACCCCAAATAAACTAATCTACACAGGAGATATCACTTTGGTGACT 115870 Query 218 TTCCGCTTTAATTACCATCTCA 239 | | |||||||||| ||| ||| Sbjct 115871 TCCTGCTTTAATTAGCATATCA 115892 >seq8249 Length=2231789 Score = 91.5 bits (100), Expect = 7e-15 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | ||||||||||||| ||| |||||||||||||| Sbjct 211093 ACACAAACATCTAACACCCCAAATAAACTAATCTACACGAGAGACATCACTTTGGTGATT 211152 Query 218 TTCCGCTTTAATTACCAT 235 | ||||||||| || ||| Sbjct 211153 TCCCGCTTTAAGTAGCAT 211170 Score = 87.8 bits (96), Expect = 8e-14 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | |||||||||| || |||| |||||||||||||| Sbjct 56953 ACACAAACATCTAACACCCCAAATAAACTAATCTACGCGAAAGACATCACTTTGGTGATT 57012 Query 218 TTCCGCTTTAATTACCAT 235 | |||||||| || ||| Sbjct 57013 TCTCGCTTTAAGTAGCAT 57030 >seq14494 Length=214593 Score = 89.7 bits (98), Expect = 2e-14 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | |||||||||||| |||| |||||||||||| | Sbjct 101172 ACACAAACATCTAACACCCCAAATAAACTAATCTACACAAGAGATATCACTTTGGTGACT 101231 Query 218 TTCCGCTTTAATTACCATCTCA 239 | | |||||||||| ||| ||| Sbjct 101232 TCCTGCTTTAATTAGCATATCA 101253 >seq10360 Length=1038391 Score = 89.7 bits (98), Expect = 2e-14 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | |||||||||||| |||| |||||||||||| | Sbjct 823925 ACACAAACATCTAACACCCCAAATAAACTAATCTACACAAGAGATATCACTTTGGTGACT 823866 Query 218 TTCCGCTTTAATTACCATCTCA 239 | | |||||||||| ||| ||| Sbjct 823865 TCCTGCTTTAATTAGCATATCA 823844 >seq7695 Length=1334424 Score = 89.7 bits (98), Expect = 2e-14 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | |||||||||||| |||| |||||||||||| | Sbjct 1324310 ACACAAACATCTAACACCCCAAATAAACTAATCTACACAAGAGATATCACTTTGGTGACT 1324251 Query 218 TTCCGCTTTAATTACCATCTCA 239 | | |||||||||| ||| ||| Sbjct 1324250 TCCTGCTTTAATTAGCATATCA 1324229 >seq7440 Length=327141 Score = 89.7 bits (98), Expect = 2e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 |||||||||||||||||||| || | |||||||||||| ||| |||||||||||| | Sbjct 91639 ACACAAATATCTAACACCCCAAATAAACTAATCTACACAAGAGACATCACTTTGGTGACT 91698 Query 218 TTCCGCTTTAATTA 231 | |||||||||||| Sbjct 91699 TCCCGCTTTAATTA 91712 >seq12071 Length=85273 Score = 87.8 bits (96), Expect = 8e-14 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | | ||||||||||| ||| |||||||||||||| Sbjct 16357 ACACAAACATCTAACACCCCAAATAAATTAATCTACACGAGAGACATCACTTTGGTGATT 16416 Query 218 TTCCGCTTTAATTACCAT 235 | ||||||||| || ||| Sbjct 16417 TACCGCTTTAAGTATCAT 16434 >seq10672 Length=129450 Score = 87.8 bits (96), Expect = 8e-14 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | | |||| |||||| |||| |||||||||||||| Sbjct 78291 ACACAAACATCTAACACCCCAAATAAATTAATTTACACGAGAGATATCACTTTGGTGATT 78350 Query 218 TTCCGCTTTAATTACCAT 235 | ||||||||| || ||| Sbjct 78351 TCCCGCTTTAAGTAGCAT 78368 >seq1913 Length=26500 Score = 87.8 bits (96), Expect = 8e-14 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | |||||||||| || |||| |||||||||||||| Sbjct 19694 ACACAAACATCTAACACCCCAAATAAACTAATCTACGCGAAAGACATCACTTTGGTGATT 19753 Query 218 TTCCGCTTTAATTACCAT 235 | |||||||| || ||| Sbjct 19754 TCTCGCTTTAAGTAGCAT 19771 >seq11083 Length=114840 Score = 86.0 bits (94), Expect = 3e-13 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| ||| |||||||| || | |||||||||||| |||| |||||||||||| | Sbjct 21012 ACACAAACATCCAACACCCCAAATAAACTAATCTACACAAGAGATATCACTTTGGTGACT 20953 Query 218 TTCCGCTTTAATTACCATCTCA 239 | | |||||||||| ||| ||| Sbjct 20952 TCCTGCTTTAATTAGCATATCA 20931 >seq6759 Length=387687 Score = 86.0 bits (94), Expect = 3e-13 Identities = 69/82 (84%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| ||||||||||| || | ||||||||||||| |||| |||||||||||| | Sbjct 237726 ACACAAACATCTAACACCCA-AATAAACTAATCTACACGAGAGATATCACTTTGGTGACT 237668 Query 218 TTCCGCTTTAATTACCATCTCA 239 | ||| |||||||| ||| ||| Sbjct 237667 TCCCGTTTTAATTAGCATATCA 237646 >seq3664 Length=633670 Score = 86.0 bits (94), Expect = 3e-13 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||||||||||||||| || | | |||||||||| |||| |||||||||||| | Sbjct 271706 ACACAAATATCTAACACCCTAAATAAATTAATCTACACAAGAGATATCACTTTGGTGACT 271647 Query 218 TTCCGCTTTAATTACCATCTCA 239 | | |||||||||| ||| ||| Sbjct 271646 TCCTGCTTTAATTAGCATATCA 271625 >seq5479 Length=592145 Score = 84.2 bits (92), Expect = 1e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | |||||||||||| | || |||||||||||| | Sbjct 521285 ACACAAACATCTAACACCCCAAATAAACTAATCTACACAAGAAATATCACTTTGGTGACT 521226 Query 218 TTCCGCTTTAATTA 231 | |||||||||||| Sbjct 521225 TCCCGCTTTAATTA 521212 >seq12706 Length=71129 Score = 80.6 bits (88), Expect = 1e-11 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | ||||||||| || ||| |||||||||||| | Sbjct 26362 ACACAAACATCTAACACCCCAAATAAACTAATCTATACAAGAGACATCACTTTGGTGACT 26421 Query 218 TTCCGCTTTAATTA 231 | |||||||||||| Sbjct 26422 TCCCGCTTTAATTA 26435 >seq10694 Length=1032288 Score = 80.6 bits (88), Expect = 1e-11 Identities = 67/82 (82%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| ||||||||| | || | |||||||||||| |||| |||||||||||| | Sbjct 742620 ACACAAACATCTAACACTTCAAATAAACTAATCTACACAAGAGATATCACTTTGGTGACT 742561 Query 218 TTCCGCTTTAATTACCATCTCA 239 | | |||||||||| ||| ||| Sbjct 742560 TCCTGCTTTAATTAGCATATCA 742539 >seq7784 Length=291313 Score = 80.6 bits (88), Expect = 1e-11 Identities = 67/82 (82%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | |||||||||||| |||| ||| |||||||| | Sbjct 32149 ACACAAACATCTAACACCCCAAATAAACTAATCTACACAAGAGATATCATTTTGGTGACT 32208 Query 218 TTCCGCTTTAATTACCATCTCA 239 | | ||||||||| ||| ||| Sbjct 32209 TCCTACTTTAATTAGCATATCA 32230 >seq8429 Length=246615 Score = 78.8 bits (86), Expect = 4e-11 Identities = 65/78 (83%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| ||||||||||| || | | ||||||||||| |||| ||| |||||||||| Sbjct 241642 ACACAAACATCTAACACCCAAAATAAATTAATCTACACGAAAGACATCA-TTTGGTGATT 241584 Query 218 TTCCGCTTTAATTACCAT 235 | ||||||||| || ||| Sbjct 241583 TACCGCTTTAAGTAGCAT 241566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23160913091340