Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq8250 95.1 7e-16 seq11782 89.7 3e-14 seq7215 89.7 3e-14 seq7136 89.7 3e-14 >seq8250 Length=1256182 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1004469 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGGTGCAC 1004528 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 1004529 GTATTAGCTCT 1004539 >seq11782 Length=94184 Score = 89.7 bits (98), Expect = 3e-14 Identities = 64/71 (90%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct 81218 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGGTTTGGTGCAC 81159 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 81158 GTATTAGCTCT 81148 >seq7215 Length=344122 Score = 89.7 bits (98), Expect = 3e-14 Identities = 64/71 (90%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct 10209 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGGTTTGGTGCAC 10268 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 10269 GTATTAGCTCT 10279 >seq7136 Length=2357723 Score = 89.7 bits (98), Expect = 3e-14 Identities = 64/71 (90%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct 1389018 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGGTTTGGTGCAC 1388959 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 1388958 GTATTAGCTCT 1388948 Score = 82.4 bits (90), Expect = 4e-12 Identities = 63/71 (89%), Gaps = 3/71 (4%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||| ||||||||||||| |||| Sbjct 1379716 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGGTTTG-GGCAC 1379658 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 1379657 GTATTAGCTCT 1379647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28401633583620