Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_015782.1 Length=7275 Score E Sequences producing significant alignments: (Bits) Value seq965 89.7 2e-14 seq616 89.7 2e-14 seq1282 86.0 3e-13 seq1 86.0 3e-13 seq1103 82.4 4e-12 seq1030 82.4 4e-12 >seq965 Length=51047765 Score = 89.7 bits (98), Expect = 2e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | |||||||||||| |||| |||||||||||| | Sbjct 22599378 ACACAAACATCTAACACCCCAAATAAACTAATCTACACAAGAGATATCACTTTGGTGACT 22599437 Query 218 TTCCGCTTTAATTA 231 | |||||||||||| Sbjct 22599438 TCCCGCTTTAATTA 22599451 Score = 86.0 bits (94), Expect = 3e-13 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | |||||||||||| |||| |||||| ||||| | Sbjct 37549373 ACACAAACATCTAACACCCCAAATAAACTAATCTACACAAGAGATATCACTTCGGTGACT 37549432 Query 218 TTCCGCTTTAATTACCATCTCA 239 | | |||||||||| ||| ||| Sbjct 37549433 TCCAGCTTTAATTAGCATATCA 37549454 >seq616 Length=36375926 Score = 89.7 bits (98), Expect = 2e-14 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | |||||||||||| |||| |||||||||||| | Sbjct 22887472 ACACAAACATCTAACACCCCAAATAAACTAATCTACACAAGAGATATCACTTTGGTGACT 22887531 Query 218 TTCCGCTTTAATTACCATCTCA 239 | | |||||||||| ||| ||| Sbjct 22887532 TCCTGCTTTAATTAGCATATCA 22887553 Score = 86.0 bits (94), Expect = 3e-13 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| ||||||||||| || | |||||||||||| |||| |||||||||||| | Sbjct 25452273 ACACAAACATCTAACACCCTAAATAAACTAATCTACACATGAGATATCACTTTGGTGACT 25452214 Query 218 TTCCGCTTTAATTACCATCTCA 239 | | |||||||||| ||| ||| Sbjct 25452213 TCCTGCTTTAATTAGCATATCA 25452192 Score = 80.6 bits (88), Expect = 1e-11 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | ||||||||| || ||| |||||||||||| | Sbjct 24388244 ACACAAACATCTAACACCCCAAATAAACTAATCTATACAAGAGACATCACTTTGGTGACT 24388303 Query 218 TTCCGCTTTAATTA 231 | |||||||||||| Sbjct 24388304 TCCCGCTTTAATTA 24388317 >seq1282 Length=25111302 Score = 86.0 bits (94), Expect = 3e-13 Identities = 69/82 (84%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| ||||||||||| || | ||||||||||||| |||| |||||||||||| | Sbjct 17559531 ACACAAACATCTAACACCCA-AATAAACTAATCTACACGAGAGATATCACTTTGGTGACT 17559473 Query 218 TTCCGCTTTAATTACCATCTCA 239 | ||| |||||||| ||| ||| Sbjct 17559472 TCCCGTTTTAATTAGCATATCA 17559451 >seq1 Length=28940139 Score = 86.0 bits (94), Expect = 3e-13 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | |||||||||||| |||| |||||||||| | | Sbjct 20946296 ACACAAACATCTAACACCCCAAATAAACTAATCTACACAAGAGATATCACTTTGGTCACT 20946355 Query 218 TTCCGCTTTAATTACCATCTCA 239 | | |||||||||| ||| ||| Sbjct 20946356 TCCTGCTTTAATTAGCATATCA 20946377 >seq1103 Length=43299053 Score = 82.4 bits (90), Expect = 4e-12 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||| ||| |||||||||||| || | ||||||||||||| ||| |||||||||||| | Sbjct 3461029 ACATAAACATCTAACACCCCAAATAAACTAATCTACACGAGAGACATCACTTTGGTGACT 3460970 Query 218 TTCCGCTTTAATTACCAT 235 | |||||||||| | ||| Sbjct 3460969 TCCCGCTTTAATCAGCAT 3460952 Score = 80.6 bits (88), Expect = 1e-11 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | |||||||||||| |||| |||||||||||| | Sbjct 17767656 ACACAAACATCTAACACCCCAAATAAACTAATCTACACAAGAGATATCACTTTGGTGACT 17767597 Query 218 TTCCGCTTTAATTA 231 | | ||||||||| Sbjct 17767596 TCCTACTTTAATTA 17767583 Score = 80.6 bits (88), Expect = 1e-11 Identities = 67/82 (82%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| || |||| |||| || | |||||||||||| |||| |||| ||||||| | Sbjct 19521864 ACACAAACATTTAACTCCCCAAATAAACTAATCTACACAAGAGATATCACCTTGGTGACT 19521805 Query 218 TTCCGCTTTAATTACCATCTCA 239 ||| |||||||||| ||| ||| Sbjct 19521804 TTCTGCTTTAATTAGCATGTCA 19521783 Score = 80.6 bits (88), Expect = 1e-11 Identities = 67/82 (82%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| ||||||||| | || | |||||||||||| |||| |||||||||||| | Sbjct 33508499 ACACAAACATCTAACACTTCAAATAAACTAATCTACACAAGAGATATCACTTTGGTGACT 33508440 Query 218 TTCCGCTTTAATTACCATCTCA 239 | | |||||||||| ||| ||| Sbjct 33508439 TCCTGCTTTAATTAGCATATCA 33508418 >seq1030 Length=25649276 Score = 82.4 bits (90), Expect = 4e-12 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | |||||||||| || |||| |||||||||||||| Sbjct 4543616 ACACAAACATCTAACACCCCAAATAAACTAATCTACGCGAAAGACATCACTTTGGTGATT 4543675 Query 218 TTCCGCTTTAATTACCAT 235 | | |||||| || ||| Sbjct 4543676 TCTCACTTTAAGTAGCAT 4543693 Score = 80.6 bits (88), Expect = 1e-11 Identities = 67/82 (82%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | |||||||||||| |||| ||||| |||||| | Sbjct 4682524 ACACAAACATCTAACACCCCAAATAAACTAATCTACACAAGAGATATCACTATGGTGACT 4682465 Query 218 TTCCGCTTTAATTACCATCTCA 239 | |||||||||| ||| ||| Sbjct 4682464 TCTTGCTTTAATTAGCATATCA 4682443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23164435675608