Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq1282 95.1 7e-16 seq1 89.7 3e-14 >seq1282 Length=25111302 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 11282857 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGGTGCAC 11282916 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 11282917 GTATTAGCTCT 11282927 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 11291398 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGGTGCAC 11291457 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 11291458 GTATTAGCTCT 11291468 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 11301102 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGGTGCAC 11301161 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 11301162 GTATTAGCTCT 11301172 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 16160710 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGGTGCAC 16160651 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 16160650 GTATTAGCTCT 16160640 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 16179812 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGGTGCAC 16179753 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 16179752 GTATTAGCTCT 16179742 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 16194035 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGGTGCAC 16193976 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 16193975 GTATTAGCTCT 16193965 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 16202631 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGGTGCAC 16202572 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 16202571 GTATTAGCTCT 16202561 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 16212220 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGGTGCAC 16212161 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 16212160 GTATTAGCTCT 16212150 Score = 89.7 bits (98), Expect = 3e-14 Identities = 64/71 (90%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct 11621106 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGGTTTGGTGCAC 11621165 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 11621166 GTATTAGCTCT 11621176 Score = 87.8 bits (96), Expect = 1e-13 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 8839 ATTGTTGCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTG 8898 ||| ||| | ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1260105 ATTATTGTTGTTGTGGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTA 1260164 Query 8899 TTGCAC 8904 ||||| Sbjct 1260165 GTGCAC 1260170 >seq1 Length=28940139 Score = 89.7 bits (98), Expect = 3e-14 Identities = 64/71 (90%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 15448303 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGGCGCAC 15448362 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 15448363 GTATTAGCTCT 15448373 Score = 86.0 bits (94), Expect = 4e-13 Identities = 63/71 (89%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 15470932 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGGCGCAT 15470991 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 15470992 GTATTAGCTCT 15471002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28405953238344