Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_015782.1 Length=7275 Score E Sequences producing significant alignments: (Bits) Value seq9 95.1 6e-16 seq1 91.5 7e-15 seq7 89.7 2e-14 seq2 89.7 2e-14 seq8 87.8 8e-14 seq5 84.2 1e-12 seq4 80.6 1e-11 >seq9 Length=40397281 Score = 95.1 bits (104), Expect = 6e-16 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | |||||||||||| | |||| |||||||||||| | Sbjct 29136691 ACACAAACATCTAACACCCCAAATAAACTAATCTACACAGGAGATATCACTTTGGTGACT 29136750 Query 218 TTCCGCTTTAATTACCATCTCA 239 | | |||||||||| ||| ||| Sbjct 29136751 TCCTGCTTTAATTAGCATATCA 29136772 Score = 95.1 bits (104), Expect = 6e-16 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | |||||||||||| | |||| |||||||||||| | Sbjct 29250471 ACACAAACATCTAACACCCCAAATAAACTAATCTACACAGGAGATATCACTTTGGTGACT 29250530 Query 218 TTCCGCTTTAATTACCATCTCA 239 | | |||||||||| ||| ||| Sbjct 29250531 TCCTGCTTTAATTAGCATATCA 29250552 Score = 84.2 bits (92), Expect = 1e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | |||||||||||| ||| |||||||||||| | Sbjct 13283791 ACACAAACATCTAACACCCCTAATAAACTAATCTACACAAGAGACATCACTTTGGTGACT 13283732 Query 218 TTCCGCTTTAATTA 231 | |||||||||||| Sbjct 13283731 TCCCGCTTTAATTA 13283718 Score = 78.8 bits (86), Expect = 4e-11 Identities = 64/78 (82%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | || |||||||||| ||| |||||||||||| | Sbjct 31756364 ACACAAACATCTAACACCCCAAATAAACCAATCTACACGAGAGACATCACTTTGGTGACT 31756305 Query 218 TTCCGCTTTAATTACCAT 235 | || ||||||| | ||| Sbjct 31756304 TCCCACTTTAATCAACAT 31756287 >seq1 Length=32082701 Score = 91.5 bits (100), Expect = 7e-15 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | ||||||||||||| ||| |||||||||||||| Sbjct 27318213 ACACAAACATCTAACACCCCAAATAAACTAATCTACACGAGAGACATCACTTTGGTGATT 27318154 Query 218 TTCCGCTTTAATTACCAT 235 | ||||||||| || ||| Sbjct 27318153 TCCCGCTTTAAGTAGCAT 27318136 Score = 89.7 bits (98), Expect = 2e-14 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | |||||||||||| |||| |||||||||||| | Sbjct 21302896 ACACAAACATCTAACACCCCAAATAAACTAATCTACACAAGAGATATCACTTTGGTGACT 21302955 Query 218 TTCCGCTTTAATTACCATCTCA 239 | | |||||||||| ||| ||| Sbjct 21302956 TCCTGCTTTAATTAGCATATCA 21302977 >seq7 Length=22269817 Score = 89.7 bits (98), Expect = 2e-14 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | |||||||||||| |||| |||||||||||| | Sbjct 3468571 ACACAAACATCTAACACCCCAAATAAACTAATCTACACAAGAGATATCACTTTGGTGACT 3468512 Query 218 TTCCGCTTTAATTACCATCTCA 239 | | |||||||||| ||| ||| Sbjct 3468511 TCCTGCTTTAATTAGCATATCA 3468490 >seq2 Length=53008150 Score = 89.7 bits (98), Expect = 2e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | |||||||||||| |||| |||||||||||| | Sbjct 31343724 ACACAAACATCTAACACCCCAAATAAACTAATCTACACAAAAGACATCACTTTGGTGACT 31343665 Query 218 TTCCGCTTTAATTA 231 | |||||||||||| Sbjct 31343664 TCCCGCTTTAATTA 31343651 Score = 80.6 bits (88), Expect = 1e-11 Identities = 67/82 (82%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| ||||||||| | || | |||||||||||| |||| |||||||||||| | Sbjct 23900078 ACACAAACATCTAACACTTCAAATAAACTAATCTACACAAGAGATATCACTTTGGTGACT 23900137 Query 218 TTCCGCTTTAATTACCATCTCA 239 | | |||||||||| ||| ||| Sbjct 23900138 TCCTGCTTTAATTAGCATATCA 23900159 Score = 80.6 bits (88), Expect = 1e-11 Identities = 67/82 (82%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| ||||||||| | || | |||||||||||| |||| |||||||||||| | Sbjct 42635069 ACACAAACATCTAACACTTCAAATAAACTAATCTACACAAGAGATATCACTTTGGTGACT 42635128 Query 218 TTCCGCTTTAATTACCATCTCA 239 | | |||||||||| ||| ||| Sbjct 42635129 TCCTGCTTTAATTAGCATATCA 42635150 >seq8 Length=21028080 Score = 87.8 bits (96), Expect = 8e-14 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | |||||||||||| |||| |||||||||||| | Sbjct 10566188 ACACAAACATCTAACACCCCAAATAAACTAATCTACACAAGAGATATCACTTTGGTGACT 10566129 Query 218 TTCCGCTTTAATTACCAT 235 | | |||||||||| ||| Sbjct 10566128 TCCTGCTTTAATTAGCAT 10566111 Score = 86.0 bits (94), Expect = 3e-13 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | |||||||||||| |||| |||||||||||| | Sbjct 10502821 ACACAAACATCTAACACCCCAAATAAACTAATCTACACAAGAGATATCACTTTGGTGACT 10502762 Query 218 TTCCGCTTTAATTACCATCTCA 239 | |||||||||| ||| ||| Sbjct 10502761 TCTTGCTTTAATTAGCATATCA 10502740 Score = 86.0 bits (94), Expect = 3e-13 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| ||||||||||| || | |||||||||||| |||| |||||||||||| | Sbjct 10975351 ACACAAACATCTAACACCCTAAATAAACTAATCTACACAAGAGATATCACTTTGGTGACT 10975292 Query 218 TTCCGCTTTAATTACCATCTCA 239 | | |||||||||| ||| ||| Sbjct 10975291 TCCTGCTTTAATTAGCATATCA 10975270 >seq5 Length=49531769 Score = 84.2 bits (92), Expect = 1e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | |||||||||||| ||| |||||||||||| | Sbjct 25173680 ACACAAACATCTAACACCCCAAATAAACTAATCTACACAAGAGACATCACTTTGGTGACT 25173739 Query 218 TTCCGCTTTAATTA 231 | |||||||||||| Sbjct 25173740 TCCCGCTTTAATTA 25173753 >seq4 Length=29346085 Score = 80.6 bits (88), Expect = 1e-11 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | |||||||||||| ||| |||||||||||| | Sbjct 21293207 ACACAAACATCTAACACCCCAAATAAACTAATCTACACAAGAGACATCACTTTGGTGACT 21293148 Query 218 TTCCGCTTTAATTA 231 | || ||||||||| Sbjct 21293147 TCCCACTTTAATTA 21293134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23164408051584