Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq29648 114 5e-22 seq26550 114 5e-22 seq2039 114 5e-22 seq80 105 3e-19 seq27274 102 3e-18 seq26497 100 1e-17 seq19266 100 1e-17 seq26183 96.9 1e-16 seq25119 96.9 1e-16 seq23344 96.9 1e-16 >seq29648 Length=1601 Score = 114 bits (126), Expect = 5e-22 Identities = 96/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||| || | | ||| ||||| | ||||| |||| Sbjct 1130 TTTATGATACTATGCAATTTGTGCGACCCGATGTACAGACAATATGCATGGGATTGGCCG 1189 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 | || ||||| ||| || |||||| || |||| || ||||||||||||||||||||| Sbjct 1190 CCTCCATGGGGTCTTTTCTCCTGGCCGCCGGAGCAAGTACCAAACGTCTAGCATTCCC 1247 >seq26550 Length=262985 Score = 114 bits (126), Expect = 5e-22 Identities = 96/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||| || | | ||| ||||| | ||||| |||| Sbjct 258406 TTTATGATACTATGCAATTTGTGCGACCCGATGTACAGACAATATGCATGGGATTGGCCG 258465 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 | || ||||| ||| || |||||| || |||| || ||||||||||||||||||||| Sbjct 258466 CCTCCATGGGGTCTTTTCTCCTGGCCGCCGGAGCAAGTACCAAACGTCTAGCATTCCC 258523 >seq2039 Length=46186 Score = 114 bits (126), Expect = 5e-22 Identities = 96/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||| || ||| ||| |||| | ||||| |||| Sbjct 44366 TTTATGATACTATGCAATTTGTGCAACCCGATGTCCAGACAATATGTATGGGATTGGCCG 44425 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 | || ||||| ||| || |||||| || |||| || ||||||||||||||||||||| Sbjct 44426 CCTCCATGGGGTCTTTTCTCCTGGCCGCCGGAGCAAGTACCAAACGTCTAGCATTCCC 44483 >seq80 Length=66064 Score = 105 bits (116), Expect = 3e-19 Identities = 94/118 (80%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||| || | | ||| ||||| | ||||| |||| Sbjct 48583 TTTATGATACTATGCAATTTGTGCGACCCGATGTACAGACAATATGCATGGGATTGGCCG 48524 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 | || ||||| ||| || ||||| | |||| || ||||||||||||||||||||| Sbjct 48523 CCTCCATGGGGTCTTTTCTCCTGAACACCGGAGCAAGTACCAAACGTCTAGCATTCCC 48466 >seq27274 Length=221448 Score = 102 bits (112), Expect = 3e-18 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||| || | | ||| ||||| | ||||| |||| Sbjct 91247 TTTATGATACTATGCAATTTGTGCGACCCGATGTACAGACAATATGCATGGGATTGGCCG 91306 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTC 117 | || ||||| ||| || |||||| || |||| || ||||||| |||||||| || Sbjct 91307 CCTCCATGGGGTCTTTTCTCCTGGCCGCCGGAGCAAGTACCAAATGTCTAGCAATC 91362 >seq26497 Length=4058 Score = 100 bits (110), Expect = 1e-17 Identities = 93/118 (79%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| ||||| ||| || | | ||| ||||| | |||| |||| Sbjct 2809 TTTATGATACTATGCAATTTGTGTGACCCGATGTACAGACAATATGCATGCGATTGGCCG 2868 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 | || ||||||| | || |||||| || | || || ||||||||||||||||||||| Sbjct 2869 CCTCTATGGGATTTTTTCTCCTGGCCGCCGAAGCAAGTACCAAACGTCTAGCATTCCC 2926 >seq19266 Length=11907 Score = 100 bits (110), Expect = 1e-17 Identities = 93/118 (79%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||| || | | ||| ||||| | |||| |||| Sbjct 4508 TTTATGATACTATGCAATTTGTGCGACCCGATGTACAGACAATATGCATGGGATCGGCCG 4449 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 | || ||||| ||| || |||||| | ||| || ||||||||||||||||||||| Sbjct 4448 CCTCCATGGGGTCTTTTCTCCTGGCTGCCGGAACAAGTACCAAACGTCTAGCATTCCC 4391 >seq26183 Length=286087 Score = 96.9 bits (106), Expect = 1e-16 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||| | ||| || | | || ||||| | ||||| |||| Sbjct 218908 TTTATGATACTATGCAATTTGTACGACCCGATGTACAGGCAATATGCATGGGATTGGCCG 218849 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 | || ||||| ||| || |||| | | |||| || ||||||||||||||||||||| Sbjct 218848 CCTCCATGGGGTCTTTTCTCCTAGCCTCCGGAGCAAGTACCAAACGTCTAGCATTCCC 218791 >seq25119 Length=352517 Score = 96.9 bits (106), Expect = 1e-16 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||| ||| |||||| ||| || | | ||| ||||| | ||||| ||| Sbjct 101107 TTTATGATACTATACAATTTGTGCGACCTGATGTACAGACAATATGCATGGGATTGGCCA 101048 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 | || ||||| ||| || |||||| || |||| || |||||||||||||| ||| || Sbjct 101047 CCTCCATGGGGTCTTTTCTCCTGGCCGCCGGAGCAAGTACCAAACGTCTAGGATTTCC 100990 >seq23344 Length=366299 Score = 96.9 bits (106), Expect = 1e-16 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||| ||| |||| | ||| || | | ||| ||||| | ||||| |||| Sbjct 9215 TTTATGATACTATACAATTTGTACGACCCGATGTACAGACAATATGCATGGGATTGGCCG 9156 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 | || ||||| ||| || |||| | | |||| || ||||||||||||||||||||| Sbjct 9155 CCTCCATGGGGTCTTTTCTCCTAGCCACCGGAGCAAGTACCAAACGTCTAGCATTCCC 9098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19039581478080