Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_015782.1 Length=7275 Score E Sequences producing significant alignments: (Bits) Value seq29176 95.1 6e-16 seq8564 95.1 6e-16 seq27173 91.5 7e-15 seq11343 91.5 7e-15 seq29500 89.7 2e-14 seq28343 89.7 2e-14 seq14454 89.7 2e-14 seq7965 89.7 2e-14 seq26729 87.8 8e-14 seq30846 86.0 3e-13 seq29822 86.0 3e-13 seq29646 86.0 3e-13 seq18676 86.0 3e-13 seq9009 86.0 3e-13 seq5897 86.0 3e-13 seq283 84.2 1e-12 seq15565 82.4 4e-12 seq3339 82.4 4e-12 seq29467 80.6 1e-11 seq11231 80.6 1e-11 seq6232 80.6 1e-11 seq4417 78.8 4e-11 >seq29176 Length=818675 Score = 95.1 bits (104), Expect = 6e-16 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | |||||||||||| | |||| |||||||||||| | Sbjct 689205 ACACAAACATCTAACACCCCAAATAAACTAATCTACACAGGAGATATCACTTTGGTGACT 689146 Query 218 TTCCGCTTTAATTACCATCTCA 239 | | |||||||||| ||| ||| Sbjct 689145 TCCTGCTTTAATTAACATATCA 689124 >seq8564 Length=539881 Score = 95.1 bits (104), Expect = 6e-16 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | |||||||||||| | |||| |||||||||||| | Sbjct 30621 ACACAAACATCTAACACCCCAAATAAACTAATCTACACAGGAGATATCACTTTGGTGACT 30680 Query 218 TTCCGCTTTAATTACCATCTCA 239 | | |||||||||| ||| ||| Sbjct 30681 TCCTGCTTTAATTAGCATATCA 30702 >seq27173 Length=1865913 Score = 91.5 bits (100), Expect = 7e-15 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 160 ACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATTTT 219 |||||||||||||||||| || | |||||||||||| |||| |||||||||||| || Sbjct 1036001 ACAAATATCTAACACCCCAAATAAACTAATCTACACAAGAGATATCACTTTGGTGACTTC 1035942 Query 220 CCGCTTTAATTACCATCTCA 239 | |||||||||| ||| ||| Sbjct 1035941 CTGCTTTAATTAGCATATCA 1035922 >seq11343 Length=17612 Score = 91.5 bits (100), Expect = 7e-15 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 160 ACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATTTT 219 |||||||||||||||||| || | |||||||||||| |||| |||||||||||| || Sbjct 11544 ACAAATATCTAACACCCCAAATAAACTAATCTACACAAGAGATATCACTTTGGTGACTTC 11485 Query 220 CCGCTTTAATTACCATCTCA 239 | |||||||||| ||| ||| Sbjct 11484 CTGCTTTAATTAGCATATCA 11465 >seq29500 Length=143079 Score = 89.7 bits (98), Expect = 2e-14 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | |||||||||||| |||| |||||||||||| | Sbjct 94641 ACACAAACATCTAACACCCCAAATAAACTAATCTACACAAGAGATATCACTTTGGTGACT 94582 Query 218 TTCCGCTTTAATTACCATCTCA 239 | | |||||||||| ||| ||| Sbjct 94581 TCCTGCTTTAATTAGCATATCA 94560 >seq28343 Length=182466 Score = 89.7 bits (98), Expect = 2e-14 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | |||||||||||| |||| |||||||||||| | Sbjct 179933 ACACAAACATCTAACACCCCAAATAAACTAATCTACACAAGAGATATCACTTTGGTGACT 179992 Query 218 TTCCGCTTTAATTACCATCTCA 239 | | |||||||||| ||| ||| Sbjct 179993 TCCTGCTTTAATTAGCATATCA 180014 >seq14454 Length=1202051 Score = 89.7 bits (98), Expect = 2e-14 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 |||||||||||||||||||| || | |||||||||||| |||| |||||||||||| | Sbjct 614782 ACACAAATATCTAACACCCCAAATAAACTAATCTACACAAGAGATATCACTTTGGTGACT 614841 Query 218 TTCCGCTTTAATTACCATCTCA 239 | |||||||||| ||| ||| Sbjct 614842 TCTTGCTTTAATTAGCATATCA 614863 >seq7965 Length=21833 Score = 89.7 bits (98), Expect = 2e-14 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||| ||||| || | |||||||||||| | |||| |||||||||||| | Sbjct 64 ACACAAACATCTAATACCCCAAATAAACTAATCTACACAGGAGATATCACTTTGGTGACT 123 Query 218 TTCCGCTTTAATTACCATCTCA 239 | | |||||||||| ||| ||| Sbjct 124 TCCTGCTTTAATTAGCATATCA 145 >seq26729 Length=251310 Score = 87.8 bits (96), Expect = 8e-14 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | |||||||||||| ||| |||||||||||||| Sbjct 164446 ACACAAACATCTAACACCCCAAATAAACTAATCTACACCAGAGACATCACTTTGGTGATT 164387 Query 218 TTCCGCTTTAATTACCAT 235 | ||||||||| || ||| Sbjct 164386 TCCCGCTTTAAGTAGCAT 164369 >seq30846 Length=759859 Score = 86.0 bits (94), Expect = 3e-13 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | |||||||||||| | |||| |||||||||||| | Sbjct 652372 ACACAAACATCTAACACCCCAAATAAACTAATCTACACAGGAGATATCACTTTGGTGACT 652313 Query 218 TTCCGCTTTAATTACCATCTCA 239 | | || |||||| ||| ||| Sbjct 652312 TCCTGCGCTAATTAGCATATCA 652291 >seq29822 Length=134752 Score = 86.0 bits (94), Expect = 3e-13 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||||||||||||||| || | ||||||||| || |||| |||||||||||| | Sbjct 91005 ACACAAATATCTAACACCCTAAATAAACTAATCTAGACATGAGATATCACTTTGGTGACT 90946 Query 218 TTCCGCTTTAATTACCATCTCA 239 | | |||||||||| ||| ||| Sbjct 90945 TCCTGCTTTAATTAGCATATCA 90924 >seq29646 Length=523756 Score = 86.0 bits (94), Expect = 3e-13 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||||||||||||||| || | ||||||||||| | |||| |||||||| ||| | Sbjct 224868 ACACAAATATCTAACACCCAAAATAAACTAATCTACATAGGAGATATCACTTTGTTGACT 224809 Query 218 TTCCGCTTTAATTACCATCTCA 239 | | |||||||||| ||| ||| Sbjct 224808 TCCTGCTTTAATTAGCATATCA 224787 >seq18676 Length=409691 Score = 86.0 bits (94), Expect = 3e-13 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| ||||||||||| || | |||||||||||| |||| |||||||||||| | Sbjct 141880 ACACAAACATCTAACACCCTAAATAAACTAATCTACACAAGAGATATCACTTTGGTGACT 141939 Query 218 TTCCGCTTTAATTACCATCTCA 239 | | |||||||||| ||| ||| Sbjct 141940 TCCTGCTTTAATTAGCATATCA 141961 >seq9009 Length=531474 Score = 86.0 bits (94), Expect = 3e-13 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | |||||||||||| |||| |||||||||||| | Sbjct 365752 ACACAAACATCTAACACCCCAAATAAACTAATCTACACAAGAGATATCACTTTGGTGACT 365693 Query 218 TTCCGCTTTAATTACCA 234 | | |||||||||| || Sbjct 365692 TCCTGCTTTAATTAACA 365676 >seq5897 Length=27878 Score = 86.0 bits (94), Expect = 3e-13 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | |||||||||||| | |||| |||||||||||| | Sbjct 11585 ACACAAACATCTAACACCCCAAATAAACTAATCTACACAGGAGATATCACTTTGGTGACT 11644 Query 218 TTCCGCTTTAATTACCATCTCA 239 | | || |||||| ||| ||| Sbjct 11645 TCCTGCGCTAATTAGCATATCA 11666 >seq283 Length=61821 Score = 84.2 bits (92), Expect = 1e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | |||||||||||| ||| |||||||||||| | Sbjct 49100 ACACAAACATCTAACACCCCAAATAAACTAATCTACACAAGAGACATCACTTTGGTGACT 49159 Query 218 TTCCGCTTTAATTA 231 | |||||||||||| Sbjct 49160 TCCCGCTTTAATTA 49173 >seq15565 Length=1192379 Score = 82.4 bits (90), Expect = 4e-12 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| || ||||||||| || | |||||||||||| |||| |||||||||||| | Sbjct 646641 ACACAAACATTTAACACCCCAAATAAACTAATCTACACAAGAGATATCACTTTGGTGACT 646700 Query 218 TTCCGCTTTAATTACCAT 235 | | |||||||||| ||| Sbjct 646701 TCCTGCTTTAATTATCAT 646718 >seq3339 Length=1361456 Score = 82.4 bits (90), Expect = 4e-12 Identities = 68/82 (83%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | ||||||||||| | |||| |||||||||||| | Sbjct 568087 ACACAAACATCTAACACCCCAAATAAACTAATCTACA--GGAGATATCACTTTGGTGACT 568144 Query 218 TTCCGCTTTAATTACCATCTCA 239 | | ||||||||| ||| ||| Sbjct 568145 TCCTACTTTAATTAGCATATCA 568166 >seq29467 Length=143248 Score = 80.6 bits (88), Expect = 1e-11 Identities = 67/82 (82%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||| ||| || | ||||||||| || |||| |||||||||||| | Sbjct 123535 ACACAAACATCTAACATCCCAAATAAACTAATCTAAACAAGAGATATCACTTTGGTGACT 123594 Query 218 TTCCGCTTTAATTACCATCTCA 239 | | |||||||||| ||| ||| Sbjct 123595 TCCTGCTTTAATTAGCATATCA 123616 >seq11231 Length=500899 Score = 80.6 bits (88), Expect = 1e-11 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||| | || | |||||||||||| ||| |||||||||||| | Sbjct 363075 ACACAAACATCTAACACCTCAAATAAACTAATCTACACAAGAGACATCACTTTGGTGACT 363134 Query 218 TTCCGCTTTAATTA 231 | |||||||||||| Sbjct 363135 TCCCGCTTTAATTA 363148 >seq6232 Length=561173 Score = 80.6 bits (88), Expect = 1e-11 Identities = 67/82 (82%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | |||||| ||||| ||| |||||||||||| | Sbjct 91942 ACACAAACATCTAACACCCCAAATAAACTAATATACACAAGTGATATCACTTTGGTGACT 91883 Query 218 TTCCGCTTTAATTACCATCTCA 239 | | |||||||||| ||| ||| Sbjct 91882 TCCTGCTTTAATTAGCATATCA 91861 >seq4417 Length=32591 Score = 78.8 bits (86), Expect = 4e-11 Identities = 64/78 (82%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||| ||| ||||||||| || || | |||||||||| || |||| |||||||||||||| Sbjct 25751 ACAAAAACATCTAACACTCCAAATAAACTAATCTACGCGAAAGACATCACTTTGGTGATT 25692 Query 218 TTCCGCTTTAATTACCAT 235 | |||||||| || ||| Sbjct 25691 TCTCGCTTTAAGTAGCAT 25674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23156270170476