Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_015782.1 Length=7275 Score E Sequences producing significant alignments: (Bits) Value seq17 91.5 7e-15 seq4 89.7 2e-14 seq2 89.7 2e-14 seq47 86.0 3e-13 seq5 86.0 3e-13 seq44 84.2 1e-12 seq9 84.2 1e-12 seq2400 82.4 4e-12 seq8 82.4 4e-12 seq212 80.6 1e-11 seq1 80.6 1e-11 seq126 78.8 4e-11 >seq17 Length=1441723 Score = 91.5 bits (100), Expect = 7e-15 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 155 TACACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTG 214 || ||||||| |||||||||||| || | |||||||||||| |||| ||||||||||| Sbjct 877811 TAAACACAAACATCTAACACCCCAAATAAACTAATCTACACAAGAGATATCACTTTGGTG 877752 Query 215 ATTTTCCGCTTTAATTACCATCTCA 239 | || | |||||||||| ||| ||| Sbjct 877751 ACTTCCTGCTTTAATTAGCATATCA 877727 >seq4 Length=19951838 Score = 89.7 bits (98), Expect = 2e-14 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | |||||||||||| |||| |||||||||||| | Sbjct 7910216 ACACAAACATCTAACACCCCAAATAAACTAATCTACACAAGAGATATCACTTTGGTGACT 7910157 Query 218 TTCCGCTTTAATTACCATCTCA 239 | | |||||||||| ||| ||| Sbjct 7910156 TCCTGCTTTAATTAGCATATCA 7910135 >seq2 Length=30838379 Score = 89.7 bits (98), Expect = 2e-14 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | |||||||||||| |||| |||||||||||| | Sbjct 5998343 ACACAAACATCTAACACCCCAAATAAACTAATCTACACAAGAGATATCACTTTGGTGACT 5998402 Query 218 TTCCGCTTTAATTACCATCTCA 239 | | |||||||||| ||| ||| Sbjct 5998403 TCCTGCTTTAATTAGCATATCA 5998424 Score = 89.7 bits (98), Expect = 2e-14 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | |||||||||||| |||| |||||||||||| | Sbjct 17632815 ACACAAACATCTAACACCCCAAATAAACTAATCTACACAAGAGATATCACTTTGGTGACT 17632756 Query 218 TTCCGCTTTAATTACCATCTCA 239 | | |||||||||| ||| ||| Sbjct 17632755 TCCTGCTTTAATTAGCATATCA 17632734 Score = 80.6 bits (88), Expect = 1e-11 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | ||||||||| || ||| |||||||||||| | Sbjct 16201522 ACACAAACATCTAACACCCCAAATAAACTAATCTATACAAGAGACATCACTTTGGTGACT 16201463 Query 218 TTCCGCTTTAATTA 231 | |||||||||||| Sbjct 16201462 TCCCGCTTTAATTA 16201449 >seq47 Length=599236 Score = 86.0 bits (94), Expect = 3e-13 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 || |||| |||||||||||| || | |||||||||||| |||| |||||||||||| | Sbjct 547134 ACGCAAACATCTAACACCCCAAATAAACTAATCTACACAAGAGATATCACTTTGGTGACT 547075 Query 218 TTCCGCTTTAATTACCATCTCA 239 | | |||||||||| ||| ||| Sbjct 547074 TCCTGCTTTAATTAGCATATCA 547053 >seq5 Length=36147563 Score = 86.0 bits (94), Expect = 3e-13 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | |||||||||||| |||| |||||| ||||| | Sbjct 26904117 ACACAAACATCTAACACCCCAAATAAACTAATCTACACAAGAGATATCACTTCGGTGACT 26904176 Query 218 TTCCGCTTTAATTACCATCTCA 239 | | |||||||||| ||| ||| Sbjct 26904177 TCCAGCTTTAATTAGCATATCA 26904198 >seq44 Length=677573 Score = 84.2 bits (92), Expect = 1e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | |||||||||||| ||| |||||||||||| | Sbjct 632310 ACACAAACATCTAACACCCCAAATAAACTAATCTACACAAGAGACATCACTTTGGTGACT 632369 Query 218 TTCCGCTTTAATTA 231 | |||||||||||| Sbjct 632370 TCCCGCTTTAATTA 632383 >seq9 Length=18450785 Score = 84.2 bits (92), Expect = 1e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | |||||||||||| ||| |||||||||||| | Sbjct 8100772 ACACAAACATCTAACACCCCTAATAAACTAATCTACACAAGAGACATCACTTTGGTGACT 8100713 Query 218 TTCCGCTTTAATTA 231 | |||||||||||| Sbjct 8100712 TCCCGCTTTAATTA 8100699 >seq2400 Length=762 Score = 82.4 bits (90), Expect = 4e-12 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||| ||| |||||||||||| || | ||||||||||||| ||| |||||||||||| | Sbjct 122 ACATAAACATCTAACACCCCAAATAAACTAATCTACACGAGAGACATCACTTTGGTGACT 181 Query 218 TTCCGCTTTAATTACCAT 235 | |||||||||| | ||| Sbjct 182 TCCCGCTTTAATCAGCAT 199 >seq8 Length=22711823 Score = 82.4 bits (90), Expect = 4e-12 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||| ||| |||||||||||| || | ||||||||||||| ||| |||||||||||| | Sbjct 12172485 ACATAAACATCTAACACCCCAAATAAACTAATCTACACGAGAGACATCACTTTGGTGACT 12172544 Query 218 TTCCGCTTTAATTACCAT 235 | |||||||||| | ||| Sbjct 12172545 TCCCGCTTTAATCAGCAT 12172562 Score = 80.6 bits (88), Expect = 1e-11 Identities = 67/82 (82%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| ||||||||||| || | |||||||||||| |||| |||||| ||||| | Sbjct 16794412 ACACAAACATCTAACACCCTAAATAAACTAATCTACACAAGAGATATCACTTGGGTGACT 16794353 Query 218 TTCCGCTTTAATTACCATCTCA 239 | | |||||||||| ||| ||| Sbjct 16794352 TCCTGCTTTAATTAGCATATCA 16794331 >seq212 Length=54708 Score = 80.6 bits (88), Expect = 1e-11 Identities = 67/82 (82%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| ||||||||| | || | |||||||||||| |||| |||||||||||| | Sbjct 8722 ACACAAACATCTAACACTTCAAATAAACTAATCTACACAAGAGATATCACTTTGGTGACT 8781 Query 218 TTCCGCTTTAATTACCATCTCA 239 | | |||||||||| ||| ||| Sbjct 8782 TCCTGCTTTAATTAGCATATCA 8803 >seq1 Length=28801852 Score = 80.6 bits (88), Expect = 1e-11 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||| ||| || | |||||||||||| ||| |||||||||||| | Sbjct 7781872 ACACAAACATCTAACATCCCAAATAAACTAATCTACACAAGAGACATCACTTTGGTGACT 7781813 Query 218 TTCCGCTTTAATTA 231 | |||||||||||| Sbjct 7781812 TCCCGCTTTAATTA 7781799 Score = 80.6 bits (88), Expect = 1e-11 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | |||||||||||| |||| |||||||||||| | Sbjct 10384186 ACACAAACATCTAACACCCCAAATAAACTAATCTACACAAGAGATATCACTTTGGTGACT 10384245 Query 218 TTCCGCTTTAATTA 231 | | ||||||||| Sbjct 10384246 TCCTACTTTAATTA 10384259 >seq126 Length=177459 Score = 78.8 bits (86), Expect = 4e-11 Identities = 65/78 (83%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| ||||||||||| || | ||||||||||||| |||| |||| ||||||| | Sbjct 120711 ACACAAACATCTAACACCCA-AATAAACTAATCTACACGAGAGATATCACGTTGGTGACT 120769 Query 218 TTCCGCTTTAATTACCAT 235 | ||||||||||| ||| Sbjct 120770 TCTCGCTTTAATTAGCAT 120787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23163537634224