Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_015782.1 Length=7275 Score E Sequences producing significant alignments: (Bits) Value seq141414 89.7 2e-14 seq21689 89.7 2e-14 seq21080 84.2 1e-12 seq223318 82.4 4e-12 seq195927 82.4 4e-12 seq6425 82.4 4e-12 seq3879 78.8 4e-11 >seq141414 Length=330 Score = 89.7 bits (98), Expect = 2e-14 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | |||||||||||| |||| |||||||||||| | Sbjct 124 ACACAAACATCTAACACCCCAAATAAACTAATCTACACAAGAGATATCACTTTGGTGACT 183 Query 218 TTCCGCTTTAATTACCATCTCA 239 | | |||||||||| ||| ||| Sbjct 184 TCCTGCTTTAATTAGCATATCA 205 >seq21689 Length=470 Score = 89.7 bits (98), Expect = 2e-14 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | |||||||||||| |||| |||||||||||| | Sbjct 370 ACACAAACATCTAACACCCCAAATAAACTAATCTACACAAGAGATATCACTTTGGTGACT 311 Query 218 TTCCGCTTTAATTACCATCTCA 239 | | |||||||||| ||| ||| Sbjct 310 TCCTGCTTTAATTAGCATATCA 289 >seq21080 Length=1369 Score = 84.2 bits (92), Expect = 1e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | |||||||||||| ||| |||||||||||| | Sbjct 1181 ACACAAACATCTAACACCCCAAATAAACTAATCTACACAAGAGACATCACTTTGGTGACT 1122 Query 218 TTCCGCTTTAATTA 231 | |||||||||||| Sbjct 1121 TCCCGCTTTAATTA 1108 >seq223318 Length=442 Score = 82.4 bits (90), Expect = 4e-12 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | ||||||||||||| ||| |||| |||| |||| Sbjct 136 ACACAAACATCTAACACCCCAAATAAACTAATCTACACGAGAGACATCACGTTGGCGATT 195 Query 218 TTCCGCTTTAATTACCAT 235 | ||||||||| || ||| Sbjct 196 TCCCGCTTTAAGTAGCAT 213 >seq195927 Length=611 Score = 82.4 bits (90), Expect = 4e-12 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| ||||||||||| || | ||||||||||||| |||| ||| |||||||| | Sbjct 126 ACACAAACATCTAACACCCA-AATAAACTAATCTACACGAGAGATATCATTTTGGTGACT 68 Query 218 TTCCGCTTTAATTACCATCTCA 239 | |||||||||||| || ||| Sbjct 67 TCCCGCTTTAATTAGTATATCA 46 >seq6425 Length=1286 Score = 82.4 bits (90), Expect = 4e-12 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 158 ACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATT 217 ||||||| |||||||||||| || | |||||||||| || |||| |||||||||||||| Sbjct 156 ACACAAACATCTAACACCCCAAATAAACTAATCTACGCGAAAGACATCACTTTGGTGATT 215 Query 218 TTCCGCTTTAATTACCAT 235 | | |||||| || ||| Sbjct 216 TCTCACTTTAAGTAGCAT 233 >seq3879 Length=245 Score = 78.8 bits (86), Expect = 4e-11 Identities = 60/71 (85%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 161 CAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTGATTTTC 220 |||| |||||||||||| || | ||||||||| || |||| |||||||||||| || | Sbjct 245 CAAACATCTAACACCCCAAATAAACTAATCTATACAAGAGATATCACTTTGGTGACTTCC 186 Query 221 CGCTTTAATTA 231 ||||||||||| Sbjct 185 CGCTTTAATTA 175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23102649073248