Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq20013 156 2e-34 seq12079 156 2e-34 seq13927 118 4e-23 seq18988 87.8 7e-14 >seq20013 Length=17211 Score = 156 bits (172), Expect = 2e-34 Identities = 106/119 (89%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 1 CTTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCC 60 |||||||||||||||||| |||| | |||||| | | ||| ||||| | |||| |||| Sbjct 8141 CTTTATGATACTATGCAATTTGTACAACCAGATGTACAGACAATATGCATGGGATCAGCC 8200 Query 61 GCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 8201 GCTTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 8259 >seq12079 Length=12636 Score = 156 bits (172), Expect = 2e-34 Identities = 106/119 (89%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 1 CTTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCC 60 |||||||||||||||||| |||| | |||||| | | ||| ||||| | |||| |||| Sbjct 1281 CTTTATGATACTATGCAATTTGTACAACCAGATGTACAGACAATATGCATGGGATCAGCC 1340 Query 61 GCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1341 GCTTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 1399 >seq13927 Length=35312 Score = 118 bits (130), Expect = 4e-23 Identities = 102/125 (82%), Gaps = 1/125 (1%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| ||| | || || | ||| ||||| | |||| | ||| Sbjct 22254 TTTATGATACTATGCAATATGTACAACTGGATGTATAGACAATATGCATGGGATCAACCG 22195 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGC-ATTCCCG 120 |||||||||||||| |||||||||||||||||||||||||||||| |||||| ||| | Sbjct 22194 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACATCTAGCTATTTGAG 22135 Query 121 AGAAA 125 ||||| Sbjct 22134 AGAAA 22130 >seq18988 Length=14164 Score = 87.8 bits (96), Expect = 7e-14 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 13 ATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCGCTTCAATGGGA 72 |||||| |||| | |||||| | | ||| ||||| | |||| |||||||||||||||| Sbjct 7664 ATGCAATTTGTACAACCAGATGTACAGACAATATGCATGGGATCAGCCGCTTCAATGGGA 7605 Query 73 TCTGTTATCCTGGTCGGAGGA 93 ||| ||||||||||||||||| Sbjct 7604 TCTTTTATCCTGGTCGGAGGA 7584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19042217976000