Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq31464 156 2e-34 seq270 156 2e-34 seq1396 138 4e-29 seq55 123 9e-25 seq20 118 4e-23 seq3 105 3e-19 >seq31464 Length=156017 Score = 156 bits (172), Expect = 2e-34 Identities = 106/119 (89%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||| | | | ||||||||| | |||||||||| Sbjct 72885 TTTATGATACTATGCAATTTGTGCAACCACATGTACAGACAGTATGCATGGGATTAGCCG 72826 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCCG 120 |||||||||||||| |||| || |||||||||||||||||||||||||||||||||||| Sbjct 72825 CTTCAATGGGATCTTTTATTCTAGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCCG 72767 >seq270 Length=7992 Score = 156 bits (172), Expect = 2e-34 Identities = 106/119 (89%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||| | | | ||||||||| | |||||||||| Sbjct 2466 TTTATGATACTATGCAATTTGTGCAACCACATGTACAGACAGTATGCATGGGATTAGCCG 2407 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCCG 120 |||||||||||||| |||| || |||||||||||||||||||||||||||||||||||| Sbjct 2406 CTTCAATGGGATCTTTTATTCTAGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCCG 2348 >seq1396 Length=6551095 Score = 138 bits (152), Expect = 4e-29 Identities = 102/119 (86%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||| | | | ||| ||||| | | |||||||| Sbjct 626116 TTTATGATACTATGCAATTTGTGCAACCTCATGTACAGACAATATGCATGGAATTAGCCG 626175 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCCG 120 |||||||||||||| |||| || ||||||||||||||||||||| |||||||||||||| Sbjct 626176 CTTCAATGGGATCTTTTATTCTAGTCGGAGGAGAAATTACCAAATGTCTAGCATTCCCG 626234 >seq55 Length=2427786 Score = 123 bits (136), Expect = 9e-25 Identities = 98/118 (83%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||| | |||| | ||| ||||| | |||||||| | Sbjct 1890651 TTTATGATACTATGCAATTTGTACAACCACGTGTATAGACAATATGCATGGGATTAGCTG 1890592 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||| Sbjct 1890591 CTTCAATGAGATCTTTTATTCTAGTCGGAGGAGAAATTACCAAACGTCTAGCAATCCC 1890534 >seq20 Length=5720136 Score = 118 bits (130), Expect = 4e-23 Identities = 88/103 (85%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| | || | | | ||| ||||| | |||||||||| Sbjct 4666159 TTTATGATACTATGCAATTTGTGCAATCACATGTACAGACAATATGCATGGGATTAGCCG 4666218 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAA 104 |||||||||||||| |||| || |||||||||||||||||||| Sbjct 4666219 CTTCAATGGGATCTTTTATTCTAGTCGGAGGAGAAATTACCAA 4666261 >seq3 Length=9040196 Score = 105 bits (116), Expect = 3e-19 Identities = 79/93 (85%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 27 ACCAGAAATCCGTACAGTATGCGTAGGATTAGCCGCTTCAATGGGATCTGTTATCCTGGT 86 |||| | || | ||| ||||| | ||||||||||||||||| |||||| ||| || || Sbjct 6158559 ACCACATATACAGACAATATGCATGGGATTAGCCGCTTCAATAGGATCTTTTAGTCTAGT 6158500 Query 87 CGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||||||||||||||||||| || Sbjct 6158499 CGGAGGAGAAATTACCAAACGTCTAGCATTACC 6158467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19039845419520