Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq8 96.9 2e-16 seq64 93.3 2e-15 seq13172 91.5 8e-15 seq17 87.8 1e-13 >seq8 Length=7373812 Score = 96.9 bits (106), Expect = 2e-16 Identities = 58/61 (95%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7373743 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 7373802 Query 8905 G 8905 | Sbjct 7373803 G 7373803 >seq64 Length=2007380 Score = 93.3 bits (102), Expect = 2e-15 Identities = 61/65 (94%), Gaps = 2/65 (3%) Strand=Plus/Minus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 || ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| Sbjct 12863 GTCGACCTTTTATCTAATAACTGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTA 12804 Query 8909 GCTCT 8913 ||||| Sbjct 12803 GCTCT 12799 >seq13172 Length=255 Score = 91.5 bits (100), Expect = 8e-15 Identities = 65/71 (92%), Gaps = 3/71 (4%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 133 GCCCGCGTCGACCTTTTATCTAATAA-TGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 191 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 192 GTATTAGCTCT 202 >seq17 Length=6318978 Score = 87.8 bits (96), Expect = 1e-13 Identities = 58/62 (94%), Gaps = 2/62 (3%) Strand=Plus/Plus Query 8854 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCT 8911 ||||||||||||||||||||||||||||| || ||||||||||||||||||| ||| ||| Sbjct 5835586 GACCTTTTATCTAATAAATGCATCCCTTCTAGCAGTCGGGGTTTGTTGCACGTATTAGCT 5835645 Query 8912 CT 8913 || Sbjct 5835646 CT 5835647 Score = 86.0 bits (94), Expect = 4e-13 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 8854 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 8905 ||||||||||||||||||||||||||||||| |||| ||||||||||||||| Sbjct 5189997 GACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTTGGGGTTTGTTGCACG 5189946 Score = 82.4 bits (90), Expect = 4e-12 Identities = 57/62 (92%), Gaps = 2/62 (3%) Strand=Plus/Minus Query 8854 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCT 8911 |||||||||||||||||||||||||||| ||||||||||| |||||| |||| ||| ||| Sbjct 5602519 GACCTTTTATCTAATAAATGCATCCCTTTCAGAAGTCGGGATTTGTTTCACGTATTAGCT 5602460 Query 8912 CT 8913 || Sbjct 5602459 CT 5602458 Score = 80.6 bits (88), Expect = 2e-11 Identities = 50/54 (93%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || |||||||||||||||||||||||| |||| ||||||| ||||||||||||| Sbjct 5222899 GTCGACCTTTTATCTAATAAATGCATCACTTCAAGAAGTCAGGGTTTGTTGCAC 5222846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28396344986592