Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq4 95.1 7e-16 seq17 93.3 2e-15 seq3 93.3 2e-15 >seq4 Length=23425844 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || ||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct 10189914 GCCCGTGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCAGGGTTTGTTACAC 10189855 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 10189854 GTATTAGCTCT 10189844 Score = 93.3 bits (102), Expect = 2e-15 Identities = 66/72 (92%), Gaps = 3/72 (4%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAG-AAGTCGGGGTTTGTTGCA 8903 || ||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 10179422 GCCCGTGTCGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAAGTCGGGGTTTGTTGCA 10179363 Query 8904 CG-ATT-GCTCT 8913 || ||| ||||| Sbjct 10179362 CGTATTAGCTCT 10179351 Score = 89.7 bits (98), Expect = 3e-14 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCA 8903 || || || ||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 10170718 GCCCGCGTCGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCA 10170776 >seq17 Length=15755 Score = 93.3 bits (102), Expect = 2e-15 Identities = 66/72 (92%), Gaps = 3/72 (4%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAG-AAGTCGGGGTTTGTTGCA 8903 || ||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 12544 GCCCGTGTCGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAAGTCGGGGTTTGTTGCA 12603 Query 8904 CG-ATT-GCTCT 8913 || ||| ||||| Sbjct 12604 CGTATTAGCTCT 12615 >seq3 Length=39782674 Score = 93.3 bits (102), Expect = 2e-15 Identities = 66/72 (92%), Gaps = 3/72 (4%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAG-AAGTCGGGGTTTGTTGCA 8903 || ||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 21394596 GCCCGTGTCGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAAGTCGGGGTTTGTTGCA 21394655 Query 8904 CG-ATT-GCTCT 8913 || ||| ||||| Sbjct 21394656 CGTATTAGCTCT 21394667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28406339281320