Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq14876 154 6e-34 seq15327 104 9e-19 seq16179 80.6 1e-11 seq14981 80.6 1e-11 >seq14876 Length=133212 Score = 154 bits (170), Expect = 6e-34 Identities = 105/118 (89%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||| |||| |||| |||| ||||| | Sbjct 30420 TTTATGATACTATGCAATTTGTGCGACCAGATGTCCATACAATATGTATAGGGTTAGCTG 30361 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||| Sbjct 30360 CTTCAATGGGATCTTTTATACTGGTCGGAGGAGAAATTACCAAACGTTTAGCATTCCC 30303 >seq15327 Length=118339 Score = 104 bits (114), Expect = 9e-19 Identities = 80/95 (84%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||||| ||| |||| |||| | || ||||| | Sbjct 61453 TTTATGATACTATGCAATTTGTGCGCCCAGATGTCCATACAATATGTATGGGGTTAGCTG 61512 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAA 96 |||||||||||||| |||| |||||||||||| || Sbjct 61513 CTTCAATGGGATCTTTTATACTGGTCGGAGGACAA 61547 >seq16179 Length=347750 Score = 80.6 bits (88), Expect = 1e-11 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 58 GCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCA 114 || ||||||||||||||| |||| ||||||||||||||||||||||||||| || || Sbjct 293219 GCTGCTTCAATGGGATCTTTTATACTGGTCGGAGGAGAAATTACCAAACGTTTAACA 293275 >seq14981 Length=104089 Score = 80.6 bits (88), Expect = 1e-11 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 58 GCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCA 114 || ||||||||||||||| |||| ||||||||||||||||||||||||||| || || Sbjct 103115 GCTGCTTCAATGGGATCTTTTATACTGGTCGGAGGAGAAATTACCAAACGTTTAACA 103171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19037007267840