Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_033774.1
Length=8913
Score E
Sequences producing significant alignments: (Bits) Value
seq13714 98.7 6e-17
seq14481 96.9 2e-16
seq16013 89.7 3e-14
seq16010 89.7 3e-14
>seq13714
Length=42945
Score = 98.7 bits (108), Expect = 6e-17
Identities = 66/71 (93%), Gaps = 2/71 (3%)
Strand=Plus/Plus
Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904
|| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 8696 GCCCGCGTTGACCTTTTATCTAATAAATGCAGCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8755
Query 8905 G-ATT-GCTCT 8913
| ||| |||||
Sbjct 8756 GTATTAGCTCT 8766
>seq14481
Length=56650
Score = 96.9 bits (106), Expect = 2e-16
Identities = 62/65 (95%), Gaps = 2/65 (3%)
Strand=Plus/Minus
Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 785 GTTGACCTTTTATCTAATAAATGCAGCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTA 726
Query 8909 GCTCT 8913
|||||
Sbjct 725 GCTCT 721
Score = 89.7 bits (98), Expect = 3e-14
Identities = 64/71 (90%), Gaps = 2/71 (3%)
Strand=Plus/Minus
Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904
|| || |||||||||||||| |||||||||| |||||||| |||||||||||||||||||
Sbjct 3644 GCCCGCGTTGACCTTTTATCAAATAAATGCAGCCCTTCCACAAGTCGGGGTTTGTTGCAC 3585
Query 8905 G-ATT-GCTCT 8913
| ||| |||||
Sbjct 3584 GTATTAGCTCT 3574
>seq16013
Length=170587
Score = 89.7 bits (98), Expect = 3e-14
Identities = 64/71 (90%), Gaps = 2/71 (3%)
Strand=Plus/Minus
Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904
|| || ||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 93698 GCCCGCGTTGACCTTTTATCTAATAAATGCAGTCCTTCCAGAAGGCGGGGTTTGTTGCAC 93639
Query 8905 G-ATT-GCTCT 8913
| ||| |||||
Sbjct 93638 GTATTAGCTCT 93628
>seq16010
Length=173124
Score = 89.7 bits (98), Expect = 3e-14
Identities = 64/71 (90%), Gaps = 2/71 (3%)
Strand=Plus/Minus
Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904
|| || ||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 55348 GCCCGCGTTGACCTTTTATCTAATAAATGCAGTCCTTCCAGAAGGCGGGGTTTGTTGCAC 55289
Query 8905 G-ATT-GCTCT 8913
| ||| |||||
Sbjct 55288 GTATTAGCTCT 55278
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 28391991137664
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |