Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq13714 98.7 6e-17 seq14481 96.9 2e-16 seq16013 89.7 3e-14 seq16010 89.7 3e-14 >seq13714 Length=42945 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || ||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 8696 GCCCGCGTTGACCTTTTATCTAATAAATGCAGCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8755 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 8756 GTATTAGCTCT 8766 >seq14481 Length=56650 Score = 96.9 bits (106), Expect = 2e-16 Identities = 62/65 (95%), Gaps = 2/65 (3%) Strand=Plus/Minus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 785 GTTGACCTTTTATCTAATAAATGCAGCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTA 726 Query 8909 GCTCT 8913 ||||| Sbjct 725 GCTCT 721 Score = 89.7 bits (98), Expect = 3e-14 Identities = 64/71 (90%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || |||||||||||||| |||||||||| |||||||| ||||||||||||||||||| Sbjct 3644 GCCCGCGTTGACCTTTTATCAAATAAATGCAGCCCTTCCACAAGTCGGGGTTTGTTGCAC 3585 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 3584 GTATTAGCTCT 3574 >seq16013 Length=170587 Score = 89.7 bits (98), Expect = 3e-14 Identities = 64/71 (90%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || ||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 93698 GCCCGCGTTGACCTTTTATCTAATAAATGCAGTCCTTCCAGAAGGCGGGGTTTGTTGCAC 93639 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 93638 GTATTAGCTCT 93628 >seq16010 Length=173124 Score = 89.7 bits (98), Expect = 3e-14 Identities = 64/71 (90%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || ||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 55348 GCCCGCGTTGACCTTTTATCTAATAAATGCAGTCCTTCCAGAAGGCGGGGTTTGTTGCAC 55289 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 55288 GTATTAGCTCT 55278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28391991137664