Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq104772 150 7e-33 seq102120 150 7e-33 seq101873 150 7e-33 seq93105 150 7e-33 seq90390 150 7e-33 seq84844 150 7e-33 seq83032 150 7e-33 seq55522 150 7e-33 seq26856 150 7e-33 seq26012 150 7e-33 seq17989 150 7e-33 seq9780 150 7e-33 seq9691 150 7e-33 seq9591 150 7e-33 seq9590 150 7e-33 seq9576 150 7e-33 seq9552 150 7e-33 seq2434 150 7e-33 seq105581 80.6 1e-11 seq51669 80.6 1e-11 seq37868 80.6 1e-11 seq5901 80.6 1e-11 >seq104772 Length=18534 Score = 150 bits (166), Expect = 7e-33 Identities = 104/118 (88%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||||| | | |||| ||||| | |||||||| | Sbjct 13985 TTTATGATACTATGCAATTTGTGCGGCCAGATGTACATACAATATGCATGGGATTAGCTG 13926 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||| Sbjct 13925 CTTCAATGGGATCTTTTATCCTGGTTGGAGGGGAAATTACCAAACGTCTAGCATTCCC 13868 >seq102120 Length=31369 Score = 150 bits (166), Expect = 7e-33 Identities = 104/118 (88%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||||| | | |||| ||||| | |||||||| | Sbjct 7748 TTTATGATACTATGCAATTTGTGCGGCCAGATGTACATACAATATGCATGGGATTAGCTG 7807 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||| Sbjct 7808 CTTCAATGGGATCTTTTATCCTGGTTGGAGGGGAAATTACCAAACGTCTAGCATTCCC 7865 >seq101873 Length=18532 Score = 150 bits (166), Expect = 7e-33 Identities = 104/118 (88%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||||| | | |||| ||||| | |||||||| | Sbjct 13985 TTTATGATACTATGCAATTTGTGCGGCCAGATGTACATACAATATGCATGGGATTAGCTG 13926 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||| Sbjct 13925 CTTCAATGGGATCTTTTATCCTGGTTGGAGGGGAAATTACCAAACGTCTAGCATTCCC 13868 >seq93105 Length=19645 Score = 150 bits (166), Expect = 7e-33 Identities = 104/118 (88%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||||| | | |||| ||||| | |||||||| | Sbjct 11898 TTTATGATACTATGCAATTTGTGCGGCCAGATGTACATACAATATGCATGGGATTAGCTG 11839 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||| Sbjct 11838 CTTCAATGGGATCTTTTATCCTGGTTGGAGGGGAAATTACCAAACGTCTAGCATTCCC 11781 >seq90390 Length=34851 Score = 150 bits (166), Expect = 7e-33 Identities = 104/118 (88%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||||| | | |||| ||||| | |||||||| | Sbjct 13985 TTTATGATACTATGCAATTTGTGCGGCCAGATGTACATACAATATGCATGGGATTAGCTG 13926 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||| Sbjct 13925 CTTCAATGGGATCTTTTATCCTGGTTGGAGGGGAAATTACCAAACGTCTAGCATTCCC 13868 >seq84844 Length=18202 Score = 150 bits (166), Expect = 7e-33 Identities = 104/118 (88%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||||| | | |||| ||||| | |||||||| | Sbjct 7748 TTTATGATACTATGCAATTTGTGCGGCCAGATGTACATACAATATGCATGGGATTAGCTG 7807 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||| Sbjct 7808 CTTCAATGGGATCTTTTATCCTGGTTGGAGGGGAAATTACCAAACGTCTAGCATTCCC 7865 >seq83032 Length=19130 Score = 150 bits (166), Expect = 7e-33 Identities = 104/118 (88%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||||| | | |||| ||||| | |||||||| | Sbjct 7748 TTTATGATACTATGCAATTTGTGCGGCCAGATGTACATACAATATGCATGGGATTAGCTG 7807 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||| Sbjct 7808 CTTCAATGGGATCTTTTATCCTGGTTGGAGGGGAAATTACCAAACGTCTAGCATTCCC 7865 >seq55522 Length=28031 Score = 150 bits (166), Expect = 7e-33 Identities = 104/118 (88%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||||| | | |||| ||||| | |||||||| | Sbjct 13985 TTTATGATACTATGCAATTTGTGCGGCCAGATGTACATACAATATGCATGGGATTAGCTG 13926 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||| Sbjct 13925 CTTCAATGGGATCTTTTATCCTGGTTGGAGGGGAAATTACCAAACGTCTAGCATTCCC 13868 >seq26856 Length=16371 Score = 150 bits (166), Expect = 7e-33 Identities = 104/118 (88%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||||| | | |||| ||||| | |||||||| | Sbjct 7748 TTTATGATACTATGCAATTTGTGCGGCCAGATGTACATACAATATGCATGGGATTAGCTG 7807 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||| Sbjct 7808 CTTCAATGGGATCTTTTATCCTGGTTGGAGGGGAAATTACCAAACGTCTAGCATTCCC 7865 >seq26012 Length=26668 Score = 150 bits (166), Expect = 7e-33 Identities = 104/118 (88%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||||| | | |||| ||||| | |||||||| | Sbjct 7748 TTTATGATACTATGCAATTTGTGCGGCCAGATGTACATACAATATGCATGGGATTAGCTG 7807 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||| Sbjct 7808 CTTCAATGGGATCTTTTATCCTGGTTGGAGGGGAAATTACCAAACGTCTAGCATTCCC 7865 >seq17989 Length=19063 Score = 150 bits (166), Expect = 7e-33 Identities = 104/118 (88%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||||| | | |||| ||||| | |||||||| | Sbjct 13985 TTTATGATACTATGCAATTTGTGCGGCCAGATGTACATACAATATGCATGGGATTAGCTG 13926 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||| Sbjct 13925 CTTCAATGGGATCTTTTATCCTGGTTGGAGGGGAAATTACCAAACGTCTAGCATTCCC 13868 >seq9780 Length=31542 Score = 150 bits (166), Expect = 7e-33 Identities = 104/118 (88%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||||| | | |||| ||||| | |||||||| | Sbjct 7748 TTTATGATACTATGCAATTTGTGCGGCCAGATGTACATACAATATGCATGGGATTAGCTG 7807 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||| Sbjct 7808 CTTCAATGGGATCTTTTATCCTGGTTGGAGGGGAAATTACCAAACGTCTAGCATTCCC 7865 >seq9691 Length=16928 Score = 150 bits (166), Expect = 7e-33 Identities = 104/118 (88%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||||| | | |||| ||||| | |||||||| | Sbjct 7748 TTTATGATACTATGCAATTTGTGCGGCCAGATGTACATACAATATGCATGGGATTAGCTG 7807 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||| Sbjct 7808 CTTCAATGGGATCTTTTATCCTGGTTGGAGGGGAAATTACCAAACGTCTAGCATTCCC 7865 >seq9591 Length=22291 Score = 150 bits (166), Expect = 7e-33 Identities = 104/118 (88%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||||| | | |||| ||||| | |||||||| | Sbjct 8307 TTTATGATACTATGCAATTTGTGCGGCCAGATGTACATACAATATGCATGGGATTAGCTG 8366 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||| Sbjct 8367 CTTCAATGGGATCTTTTATCCTGGTTGGAGGGGAAATTACCAAACGTCTAGCATTCCC 8424 >seq9590 Length=17354 Score = 150 bits (166), Expect = 7e-33 Identities = 104/118 (88%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||||| | | |||| ||||| | |||||||| | Sbjct 3370 TTTATGATACTATGCAATTTGTGCGGCCAGATGTACATACAATATGCATGGGATTAGCTG 3429 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||| Sbjct 3430 CTTCAATGGGATCTTTTATCCTGGTTGGAGGGGAAATTACCAAACGTCTAGCATTCCC 3487 >seq9576 Length=37677 Score = 150 bits (166), Expect = 7e-33 Identities = 104/118 (88%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||||| | | |||| ||||| | |||||||| | Sbjct 11818 TTTATGATACTATGCAATTTGTGCGGCCAGATGTACATACAATATGCATGGGATTAGCTG 11877 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||| Sbjct 11878 CTTCAATGGGATCTTTTATCCTGGTTGGAGGGGAAATTACCAAACGTCTAGCATTCCC 11935 >seq9552 Length=49396 Score = 150 bits (166), Expect = 7e-33 Identities = 104/118 (88%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||||| | | |||| ||||| | |||||||| | Sbjct 35412 TTTATGATACTATGCAATTTGTGCGGCCAGATGTACATACAATATGCATGGGATTAGCTG 35471 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||| Sbjct 35472 CTTCAATGGGATCTTTTATCCTGGTTGGAGGGGAAATTACCAAACGTCTAGCATTCCC 35529 >seq2434 Length=73962 Score = 150 bits (166), Expect = 7e-33 Identities = 104/118 (88%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||||| | | |||| ||||| | |||||||| | Sbjct 59978 TTTATGATACTATGCAATTTGTGCGGCCAGATGTACATACAATATGCATGGGATTAGCTG 60037 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||| Sbjct 60038 CTTCAATGGGATCTTTTATCCTGGTTGGAGGGGAAATTACCAAACGTCTAGCATTCCC 60095 >seq105581 Length=14389 Score = 80.6 bits (88), Expect = 1e-11 Identities = 89/116 (77%), Gaps = 2/116 (2%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTA-GCC 60 ||||| ||||||||| | | || | ||| | | |||| ||||| | ||| || || Sbjct 14361 TTTATAATACTATGCTATTAGTATGGCTAGATGTACATACAATATGCATGGGAGTAAGCT 14302 Query 61 GCTTCAATGGGATCTGTTATCCTGG-TCGGAGGAGAAATTACCAAACGTCTAGCAT 115 ||||||||||||||| ||||| ||| | || || |||||||||||||||||| || Sbjct 14301 GCTTCAATGGGATCTTTTATCTTGGTTAGGGGGGAAAATTACCAAACGTCTAGTAT 14246 >seq51669 Length=5826 Score = 80.6 bits (88), Expect = 1e-11 Identities = 89/116 (77%), Gaps = 2/116 (2%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTA-GCC 60 ||||| ||||||||| | | || | ||| | | |||| ||||| | ||| || || Sbjct 5798 TTTATAATACTATGCTATTAGTATGGCTAGATGTACATACAATATGCATGGGAGTAAGCT 5739 Query 61 GCTTCAATGGGATCTGTTATCCTGG-TCGGAGGAGAAATTACCAAACGTCTAGCAT 115 ||||||||||||||| ||||| ||| | || || |||||||||||||||||| || Sbjct 5738 GCTTCAATGGGATCTTTTATCTTGGTTAGGGGGGAAAATTACCAAACGTCTAGTAT 5683 >seq37868 Length=4639 Score = 80.6 bits (88), Expect = 1e-11 Identities = 89/116 (77%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTA-GCC 60 ||||| ||||||||| | | || | ||| | | |||| ||||| | ||| || || Sbjct 29 TTTATAATACTATGCTATTAGTATGGCTAGATGTACATACAATATGCATGGGAGTAAGCT 88 Query 61 GCTTCAATGGGATCTGTTATCCTGG-TCGGAGGAGAAATTACCAAACGTCTAGCAT 115 ||||||||||||||| ||||| ||| | || || |||||||||||||||||| || Sbjct 89 GCTTCAATGGGATCTTTTATCTTGGTTAGGGGGGAAAATTACCAAACGTCTAGTAT 144 >seq5901 Length=15449 Score = 80.6 bits (88), Expect = 1e-11 Identities = 89/116 (77%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTA-GCC 60 ||||| ||||||||| | | || | ||| | | |||| ||||| | ||| || || Sbjct 29 TTTATAATACTATGCTATTAGTATGGCTAGATGTACATACAATATGCATGGGAGTAAGCT 88 Query 61 GCTTCAATGGGATCTGTTATCCTGG-TCGGAGGAGAAATTACCAAACGTCTAGCAT 115 ||||||||||||||| ||||| ||| | || || |||||||||||||||||| || Sbjct 89 GCTTCAATGGGATCTTTTATCTTGGTTAGGGGGGAAAATTACCAAACGTCTAGTAT 144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19024109760000