Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq4951 150 7e-33 seq7 145 3e-31 seq3 132 2e-27 seq11 127 8e-26 >seq4951 Length=160137 Score = 150 bits (166), Expect = 7e-33 Identities = 104/118 (88%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||| || | | |||| ||||| | |||||||||| Sbjct 75554 TTTATGATACTATGCAATTTGTGCAACCCGATGTGCATACAATATGCATGGGATTAGCCG 75495 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| || |||||||||| ||||| ||||||||||||||||||||||| Sbjct 75494 CTTCAATGGGATCTTTTGTCCTGGTCGGCGGAGAGATTACCAAACGTCTAGCATTCCC 75437 >seq7 Length=52445601 Score = 145 bits (160), Expect = 3e-31 Identities = 103/118 (87%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||| | ||| || | | |||| ||||| | |||||||||| Sbjct 22311676 TTTATGATACTATGCAATTTGTTCAACCTGATGTGCATACAATATGCATGGGATTAGCCG 22311735 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||| ||||||| ||||| ||||||||||||||||||||||| Sbjct 22311736 CTTCAATGGGATCTTTTATCTTGGTCGGCGGAGAGATTACCAAACGTCTAGCATTCCC 22311793 >seq3 Length=80079441 Score = 132 bits (146), Expect = 2e-27 Identities = 100/118 (85%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 |||||||||||| |||| |||||| ||| || | | |||| ||||| ||||||||| Sbjct 56892101 TTTATGATACTACGCAATTTGTGCAACCCGATGTGCATACAATATGCAGGGGATTAGCCA 56892042 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||| ||||| ||||| ||||||||| ||||||||||||| Sbjct 56892041 CTTCAATGGGATCTTTTATCCTAGTCGGCGGAGAGATTACCAAATGTCTAGCATTCCC 56891984 >seq11 Length=45509462 Score = 127 bits (140), Expect = 8e-26 Identities = 99/118 (84%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||| | || || | | |||| ||||| | |||||| ||| Sbjct 17310878 TTTATGATACTATGCAATTTGTACAGCCCGATGTGCATACAATATGCATGGGATTACCCG 17310937 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||| |||||||| ||||| |||||||||| ||||| |||||| Sbjct 17310938 CTTCAATGGGATCTTTTATTCTGGTCGGTGGAGAGATTACCAAACATCTAGTATTCCC 17310995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19045368607680