Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq17 95.1 7e-16 seq8 95.1 7e-16 seq2 95.1 7e-16 seq1374 82.4 4e-12 seq2594 80.6 2e-11 >seq17 Length=836409 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 2272 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGGTTTGTTGCAC 2213 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 2212 GTATTAGCTCT 2202 >seq8 Length=74329289 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 51266773 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGGTTTGTTGCAC 51266832 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 51266833 GTATTAGCTCT 51266843 >seq2 Length=64235786 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 26408222 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGGTTTGTTGCAC 26408281 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 26408282 GTATTAGCTCT 26408292 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 26455511 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGGTTTGTTGCAC 26455452 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 26455451 GTATTAGCTCT 26455441 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 26470346 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGGTTTGTTGCAC 26470287 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 26470286 GTATTAGCTCT 26470276 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 26559535 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGGTTTGTTGCAC 26559594 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 26559595 GTATTAGCTCT 26559605 Score = 93.3 bits (102), Expect = 2e-15 Identities = 61/65 (94%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 || ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 20655466 GTCGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGGTTTGTTGCACGTATTA 20655525 Query 8909 GCTCT 8913 ||||| Sbjct 20655526 GCTCT 20655530 Score = 91.5 bits (100), Expect = 8e-15 Identities = 56/60 (93%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 26449819 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGGTTTGTTGCAC 26449878 Score = 89.7 bits (98), Expect = 3e-14 Identities = 64/71 (90%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||| |||||| |||||||||||| Sbjct 20656581 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGAGGTTTGTTGCAC 20656640 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 20656641 GTATTAGCTCT 20656651 Score = 89.7 bits (98), Expect = 3e-14 Identities = 52/54 (96%), Gaps = 0/54 (0%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || ||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 26149046 GTCGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGGTTTGTTGCAC 26149099 Score = 89.7 bits (98), Expect = 3e-14 Identities = 64/71 (90%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 26484087 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCAGGGTTTGTTGCAC 26484146 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 26484147 GTATTAGCTCT 26484157 Score = 87.8 bits (96), Expect = 1e-13 Identities = 63/70 (90%), Gaps = 2/70 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || |||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 26398506 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCC-TCCAAAAGTCGGGGTTTGTTGCAC 26398564 Query 8905 G-ATTGCTCT 8913 | || ||||| Sbjct 26398565 GTATAGCTCT 26398574 Score = 86.0 bits (94), Expect = 4e-13 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct 26498330 GCCCGCGTCGACCTTTTATCTAATAAATGCGTCCCTTCCAAAAGTCGGGGTTTGTTGCAC 26498389 Score = 84.2 bits (92), Expect = 1e-12 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCA 8903 |||| || |||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 27341717 GCTCACGTCGACCTTTTATCTAATAAATGCATCCCTTACAAAAGTCGGGGTTTGTTGCA 27341775 Score = 82.4 bits (90), Expect = 4e-12 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGC 8902 || || ||||||||| |||||||||||||||||||||||| |||| |||||||||||| Sbjct 26521264 GCCCGCGTTGACCTTATATCTAATAAATGCATCCCTTCCAAAAGTTGGGGTTTGTTGC 26521321 >seq1374 Length=11370 Score = 82.4 bits (90), Expect = 4e-12 Identities = 50/53 (94%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCA 8903 || || |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1743 GTCGATCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGGTTTGTTGCA 1795 >seq2594 Length=5334 Score = 80.6 bits (88), Expect = 2e-11 Identities = 47/49 (96%), Gaps = 0/49 (0%) Strand=Plus/Minus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 ||||||||||||||||||||||||||||| ||| ||||||||||||||| Sbjct 2057 CCTTTTATCTAATAAATGCATCCCTTCCAAAAGGCGGGGTTTGTTGCAC 2009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28404817799028