Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq102 104 1e-18 seq77 104 1e-18 seq65 104 1e-18 seq64 104 1e-18 seq45 104 1e-18 seq29 104 1e-18 seq11 104 1e-18 seq18 89.7 3e-14 >seq102 Length=10254 Score = 104 bits (114), Expect = 1e-18 Identities = 67/71 (94%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4632 GCTCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 4691 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 4692 GTATTAGCTCT 4702 >seq77 Length=18658056 Score = 104 bits (114), Expect = 1e-18 Identities = 67/71 (94%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5671894 GCTCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 5671835 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 5671834 GTATTAGCTCT 5671824 >seq65 Length=7851 Score = 104 bits (114), Expect = 1e-18 Identities = 67/71 (94%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3363 GCTCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 3304 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 3303 GTATTAGCTCT 3293 >seq64 Length=9524166 Score = 104 bits (114), Expect = 1e-18 Identities = 67/71 (94%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4946435 GCTCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 4946376 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 4946375 GTATTAGCTCT 4946365 Score = 104 bits (114), Expect = 1e-18 Identities = 67/71 (94%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4955689 GCTCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 4955630 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 4955629 GTATTAGCTCT 4955619 Score = 104 bits (114), Expect = 1e-18 Identities = 67/71 (94%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4964939 GCTCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 4964880 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 4964879 GTATTAGCTCT 4964869 Score = 104 bits (114), Expect = 1e-18 Identities = 67/71 (94%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4974128 GCTCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 4974069 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 4974068 GTATTAGCTCT 4974058 Score = 104 bits (114), Expect = 1e-18 Identities = 67/71 (94%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4983344 GCTCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 4983285 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 4983284 GTATTAGCTCT 4983274 Score = 104 bits (114), Expect = 1e-18 Identities = 67/71 (94%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4992581 GCTCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 4992522 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 4992521 GTATTAGCTCT 4992511 >seq45 Length=9254 Score = 104 bits (114), Expect = 1e-18 Identities = 67/71 (94%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 859 GCTCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 918 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 919 GTATTAGCTCT 929 >seq29 Length=10259 Score = 104 bits (114), Expect = 1e-18 Identities = 67/71 (94%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1079 GCTCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 1020 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 1019 GTATTAGCTCT 1009 >seq11 Length=5680 Score = 104 bits (114), Expect = 1e-18 Identities = 67/71 (94%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2279 GCTCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 2338 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 2339 GTATTAGCTCT 2349 >seq18 Length=7927 Score = 89.7 bits (98), Expect = 3e-14 Identities = 56/58 (97%), Gaps = 2/58 (3%) Strand=Plus/Minus Query 8858 TTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 7927 TTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 7870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28406348868480