Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq33 98.7 6e-17 >seq33 Length=9343251 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7316678 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 7316619 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 7316618 GTATTAGCTCT 7316608 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7326246 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 7326187 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 7326186 GTATTAGCTCT 7326176 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7336020 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 7335961 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 7335960 GTATTAGCTCT 7335950 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7355578 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 7355519 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 7355518 GTATTAGCTCT 7355508 Score = 91.5 bits (100), Expect = 8e-15 Identities = 57/59 (97%), Gaps = 2/59 (3%) Strand=Plus/Minus Query 8857 CTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 7345785 CTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 7345727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28406196113064