Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq8273 104 9e-19 seq180 93.3 2e-15 seq48488 91.5 6e-15 >seq8273 Length=27398 Score = 104 bits (114), Expect = 9e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 36 CCGTACAGTATGCGTAGGATTAGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGA 95 || |||| ||||| | ||| |||||||||||||||||||| ||||||||||||||||||| Sbjct 12812 CCATACAATATGCATGGGAATAGCCGCTTCAATGGGATCTTTTATCCTGGTCGGAGGAGA 12871 Query 96 AATTACCAAACG 107 |||||||||||| Sbjct 12872 AATTACCAAACG 12883 >seq180 Length=138302 Score = 93.3 bits (102), Expect = 2e-15 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||| |||| |||||||| ||||| ||||| | | ||||||||||| | ||| || ||| Sbjct 127148 TTTTTGATGCTATGCAACTTGTGTTACCATATACATGTACAGTATGCATTGGAATAACCG 127089 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTA 100 |||||||| |||| | ||| |||| ||||||||||||| Sbjct 127088 TTTCAATGGAATCTTTAATCATGGTTGGAGGAGAAATTA 127050 >seq48488 Length=2920 Score = 91.5 bits (100), Expect = 6e-15 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||||||||||||||||||||||||||||||| | |||||||| Sbjct 2778 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTTTTGCATTCCC 2835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 18965656417920